Cluster: HRGMv2_1951_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1951
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1951_33 | HRGMv2_1951_33_3 | 2429 | 3190 | - | 3.A.16.1.3 |
| TF | HRGMv2_1951_33 | HRGMv2_1951_33_4 | 3386 | 4399 | + | LacI |
| STP | HRGMv2_1951_33 | HRGMv2_1951_33_5 | 4438 | 5436 | + | Peripla_BP_1 |
| TC | HRGMv2_1951_33 | HRGMv2_1951_33_6 | 5526 | 6998 | + | 3.A.1.2.6 |
| TC | HRGMv2_1951_33 | HRGMv2_1951_33_7 | 6995 | 7957 | + | 3.A.1.2.13 |
| pfam | HRGMv2_1951_33 | HRGMv2_1951_33_8 | 7984 | 8910 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_1951_33 | HRGMv2_1951_33_9 | 8920 | 9957 | + | GH179 |
Gene ID: HRGMv2_1951_33_3
Type: TC
Location: 2429 - 3190 (-)
Type: TC
Location: 2429 - 3190 (-)
Gene ID: HRGMv2_1951_33_4
Type: TF
Location: 3386 - 4399 (+)
Type: TF
Location: 3386 - 4399 (+)
Gene ID: HRGMv2_1951_33_5
Type: STP
Location: 4438 - 5436 (+)
Type: STP
Location: 4438 - 5436 (+)
Gene ID: HRGMv2_1951_33_6
Type: TC
Location: 5526 - 6998 (+)
Type: TC
Location: 5526 - 6998 (+)
Gene ID: HRGMv2_1951_33_7
Type: TC
Location: 6995 - 7957 (+)
Type: TC
Location: 6995 - 7957 (+)
Gene ID: HRGMv2_1951_33_8
Type: pfam
Location: 7984 - 8910 (+)
Type: pfam
Location: 7984 - 8910 (+)
Gene ID: HRGMv2_1951_33_9
Type: CAZyme
Location: 8920 - 9957 (+)
Type: CAZyme
Location: 8920 - 9957 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_A
Species
Fusobacterium_A varium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.