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Cluster: HRGMv2_1949_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1949_1 HRGMv2_1949_1_9 9610 11319 - 2.A.21.3.21
TF HRGMv2_1949_1 HRGMv2_1949_1_10 11367 12089 - GntR
CAZyme HRGMv2_1949_1 HRGMv2_1949_1_11 12665 15595 - PL8_2
CAZyme HRGMv2_1949_1 HRGMv2_1949_1_12 15811 18228 - PL8
pfam HRGMv2_1949_1 HRGMv2_1949_1_13 18247 22740 - Autotransporter
TC HRGMv2_1949_1 HRGMv2_1949_1_14 23660 25222 - 3.A.1.1.10
TC HRGMv2_1949_1 HRGMv2_1949_1_15 25249 26127 - 3.A.1.1.10
TC HRGMv2_1949_1 HRGMv2_1949_1_16 26139 27038 - 3.A.1.1.10
TC HRGMv2_1949_1 HRGMv2_1949_1_17 27050 28180 - 3.A.1.1.6
pfam HRGMv2_1949_1 HRGMv2_1949_1_18 28341 29177 - KduI
sulfatase HRGMv2_1949_1 HRGMv2_1949_1_19 29223 29996 - S1_4
CAZyme HRGMv2_1949_1 HRGMv2_1949_1_20 30197 32173 - PL8
Gene ID: HRGMv2_1949_1_9
Type: TC
Location: 9610 - 11319 (-)
Gene ID: HRGMv2_1949_1_10
Type: TF
Location: 11367 - 12089 (-)
Gene ID: HRGMv2_1949_1_11
Type: CAZyme
Location: 12665 - 15595 (-)
Gene ID: HRGMv2_1949_1_12
Type: CAZyme
Location: 15811 - 18228 (-)
Gene ID: HRGMv2_1949_1_13
Type: pfam
Location: 18247 - 22740 (-)
Gene ID: HRGMv2_1949_1_14
Type: TC
Location: 23660 - 25222 (-)
Gene ID: HRGMv2_1949_1_15
Type: TC
Location: 25249 - 26127 (-)
Gene ID: HRGMv2_1949_1_16
Type: TC
Location: 26139 - 27038 (-)
Gene ID: HRGMv2_1949_1_17
Type: TC
Location: 27050 - 28180 (-)
Gene ID: HRGMv2_1949_1_18
Type: pfam
Location: 28341 - 29177 (-)
Gene ID: HRGMv2_1949_1_19
Type: sulfatase
Location: 29223 - 29996 (-)
Gene ID: HRGMv2_1949_1_20
Type: CAZyme
Location: 30197 - 32173 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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