Cluster: HRGMv2_1948_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: HRGMv2_1948
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1948_4 | HRGMv2_1948_4_143 | 130551 | 132914 | + | GT35 |
| CAZyme | HRGMv2_1948_4 | HRGMv2_1948_4_144 | 132920 | 134755 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_1948_4 | HRGMv2_1948_4_145 | 134782 | 135927 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_1948_4 | HRGMv2_1948_4_146 | 135946 | 137109 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_1948_4 | HRGMv2_1948_4_147 | 137120 | 138541 | + | GT5 |
| TF | HRGMv2_1948_4 | HRGMv2_1948_4_148 | 138730 | 139431 | + | HTH_DeoR |
| STP | HRGMv2_1948_4 | HRGMv2_1948_4_149 | 139428 | 140348 | + | PfkB |
| TC | HRGMv2_1948_4 | HRGMv2_1948_4_150 | 140357 | 142222 | + | 4.A.2.1.4 |
| TC | HRGMv2_1948_4 | HRGMv2_1948_4_151 | 142752 | 145043 | + | 1.B.40.2.2 |
| TC | HRGMv2_1948_4 | HRGMv2_1948_4_152 | 145075 | 146556 | + | 1.B.40.2.2 |
| NULL(UNKNOWN) | HRGMv2_1948_4 | HRGMv2_1948_4_153 | 146572 | 147171 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1948_4 | HRGMv2_1948_4_154 | 147229 | 149148 | - | GH13_11 |
Gene ID: HRGMv2_1948_4_143
Type: CAZyme
Location: 130551 - 132914 (+)
Type: CAZyme
Location: 130551 - 132914 (+)
Gene ID: HRGMv2_1948_4_144
Type: CAZyme
Location: 132920 - 134755 (+)
Type: CAZyme
Location: 132920 - 134755 (+)
Gene ID: HRGMv2_1948_4_145
Type: pfam
Location: 134782 - 135927 (+)
Type: pfam
Location: 134782 - 135927 (+)
Gene ID: HRGMv2_1948_4_146
Type: pfam
Location: 135946 - 137109 (+)
Type: pfam
Location: 135946 - 137109 (+)
Gene ID: HRGMv2_1948_4_147
Type: CAZyme
Location: 137120 - 138541 (+)
Type: CAZyme
Location: 137120 - 138541 (+)
Gene ID: HRGMv2_1948_4_148
Type: TF
Location: 138730 - 139431 (+)
Type: TF
Location: 138730 - 139431 (+)
Gene ID: HRGMv2_1948_4_149
Type: STP
Location: 139428 - 140348 (+)
Type: STP
Location: 139428 - 140348 (+)
Gene ID: HRGMv2_1948_4_150
Type: TC
Location: 140357 - 142222 (+)
Type: TC
Location: 140357 - 142222 (+)
Gene ID: HRGMv2_1948_4_151
Type: TC
Location: 142752 - 145043 (+)
Type: TC
Location: 142752 - 145043 (+)
Gene ID: HRGMv2_1948_4_152
Type: TC
Location: 145075 - 146556 (+)
Type: TC
Location: 145075 - 146556 (+)
Gene ID: HRGMv2_1948_4_153
Type:
Location: 146572 - 147171 (+)
Type:
Location: 146572 - 147171 (+)
Gene ID: HRGMv2_1948_4_154
Type: CAZyme
Location: 147229 - 149148 (-)
Type: CAZyme
Location: 147229 - 149148 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_C
Species
Fusobacterium_C necrophorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.