Cluster: HRGMv2_1948_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1948
- CGC Family ID: CGCFAM_06918
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1948_2 | HRGMv2_1948_2_226 | 255157 | 257682 | + | 4.C.1.1.4 |
| TC | HRGMv2_1948_2 | HRGMv2_1948_2_227 | 258011 | 259381 | + | 2.A.25.1.5 |
| pfam | HRGMv2_1948_2 | HRGMv2_1948_2_228 | 259883 | 264946 | + | YadA_anchor | YadA_head | YadA_head | YadA_head | YadA_head | YadA_head | YadA_stalk | YadA_stalk | YadA_stalk |
| CAZyme | HRGMv2_1948_2 | HRGMv2_1948_2_229 | 265145 | 266284 | + | CE9 |
Gene ID: HRGMv2_1948_2_226
Type: TC
Location: 255157 - 257682 (+)
Type: TC
Location: 255157 - 257682 (+)
Gene ID: HRGMv2_1948_2_227
Type: TC
Location: 258011 - 259381 (+)
Type: TC
Location: 258011 - 259381 (+)
Gene ID: HRGMv2_1948_2_228
Type: pfam
Location: 259883 - 264946 (+)
Type: pfam
Location: 259883 - 264946 (+)
Gene ID: HRGMv2_1948_2_229
Type: CAZyme
Location: 265145 - 266284 (+)
Type: CAZyme
Location: 265145 - 266284 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_C
Species
Fusobacterium_C necrophorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.