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Cluster: HRGMv2_1948_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_82 78892 79944 + GT9
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_83 79955 80713 + CE4
pfam HRGMv2_1948_1 HRGMv2_1948_1_84 80689 81453 + WaaY
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_85 81479 82663 - GT4
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_86 82788 83747 + GT2
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_87 83744 84709 + GT2
pfam HRGMv2_1948_1 HRGMv2_1948_1_88 84690 86234 + Wzy_C
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_89 86231 87370 - GT4
TC HRGMv2_1948_1 HRGMv2_1948_1_90 87602 89407 + 9.B.18.2.1
TC HRGMv2_1948_1 HRGMv2_1948_1_91 89432 90112 + 9.B.18.1.3
pfam HRGMv2_1948_1 HRGMv2_1948_1_92 90112 91005 + 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_93 91002 92138 + GT4
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_94 92135 92950 + GT2
pfam HRGMv2_1948_1 HRGMv2_1948_1_95 92926 93732 + DUF6625
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_96 93886 94863 + GT100
pfam HRGMv2_1948_1 HRGMv2_1948_1_97 94866 96116 + Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_1948_1 HRGMv2_1948_1_98 96129 97073 + GT82
Gene ID: HRGMv2_1948_1_82
Type: CAZyme
Location: 78892 - 79944 (+)
Gene ID: HRGMv2_1948_1_83
Type: CAZyme
Location: 79955 - 80713 (+)
Gene ID: HRGMv2_1948_1_84
Type: pfam
Location: 80689 - 81453 (+)
Gene ID: HRGMv2_1948_1_85
Type: CAZyme
Location: 81479 - 82663 (-)
Gene ID: HRGMv2_1948_1_86
Type: CAZyme
Location: 82788 - 83747 (+)
Gene ID: HRGMv2_1948_1_87
Type: CAZyme
Location: 83744 - 84709 (+)
Gene ID: HRGMv2_1948_1_88
Type: pfam
Location: 84690 - 86234 (+)
Gene ID: HRGMv2_1948_1_89
Type: CAZyme
Location: 86231 - 87370 (-)
Gene ID: HRGMv2_1948_1_90
Type: TC
Location: 87602 - 89407 (+)
Gene ID: HRGMv2_1948_1_91
Type: TC
Location: 89432 - 90112 (+)
Gene ID: HRGMv2_1948_1_92
Type: pfam
Location: 90112 - 91005 (+)
Gene ID: HRGMv2_1948_1_93
Type: CAZyme
Location: 91002 - 92138 (+)
Gene ID: HRGMv2_1948_1_94
Type: CAZyme
Location: 92135 - 92950 (+)
Gene ID: HRGMv2_1948_1_95
Type: pfam
Location: 92926 - 93732 (+)
Gene ID: HRGMv2_1948_1_96
Type: CAZyme
Location: 93886 - 94863 (+)
Gene ID: HRGMv2_1948_1_97
Type: pfam
Location: 94866 - 96116 (+)
Gene ID: HRGMv2_1948_1_98
Type: CAZyme
Location: 96129 - 97073 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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