dbCAN Logo

Cluster: HRGMv2_1945_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1945_13 HRGMv2_1945_13_17 17523 18662 + GT19
TC HRGMv2_1945_13 HRGMv2_1945_13_18 18729 20636 + 3.A.11.1.1
pfam HRGMv2_1945_13 HRGMv2_1945_13_19 20710 21441 + SIMPL
NULL(UNKNOWN) HRGMv2_1945_13 HRGMv2_1945_13_20 21566 22075 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1945_13 HRGMv2_1945_13_21 22094 23011 - 2.A.4.1.3
TC HRGMv2_1945_13 HRGMv2_1945_13_22 23107 24534 - 2.A.6.2.20
TC HRGMv2_1945_13 HRGMv2_1945_13_23 24531 27275 - 2.A.6.2.7
TC HRGMv2_1945_13 HRGMv2_1945_13_24 27272 27643 - 2.A.6.2.22
TC HRGMv2_1945_13 HRGMv2_1945_13_25 27671 28828 - 2.A.6.2.19
Gene ID: HRGMv2_1945_13_17
Type: CAZyme
Location: 17523 - 18662 (+)
Gene ID: HRGMv2_1945_13_18
Type: TC
Location: 18729 - 20636 (+)
Gene ID: HRGMv2_1945_13_19
Type: pfam
Location: 20710 - 21441 (+)
Gene ID: HRGMv2_1945_13_20
Type:
Location: 21566 - 22075 (-)
Gene ID: HRGMv2_1945_13_21
Type: TC
Location: 22094 - 23011 (-)
Gene ID: HRGMv2_1945_13_22
Type: TC
Location: 23107 - 24534 (-)
Gene ID: HRGMv2_1945_13_23
Type: TC
Location: 24531 - 27275 (-)
Gene ID: HRGMv2_1945_13_24
Type: TC
Location: 27272 - 27643 (-)
Gene ID: HRGMv2_1945_13_25
Type: TC
Location: 27671 - 28828 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1945_13_17 vegetarian > vegan 1.05351 0.02242
HRGMv2_1945_13_18 vegetarian > vegan 1.14632 0.02242

🧭 Explore Read Mapping of CGC

← Back to Cluster List