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Cluster: HRGMv2_1945_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1945_2 HRGMv2_1945_2_81 69719 70609 + 3.A.1.105.4
TC HRGMv2_1945_2 HRGMv2_1945_2_82 70617 71540 + 3.A.1.105.15
TC HRGMv2_1945_2 HRGMv2_1945_2_83 71533 72273 + 3.A.1.105.15
TC HRGMv2_1945_2 HRGMv2_1945_2_84 72212 73369 + 3.A.1.105.4
TC HRGMv2_1945_2 HRGMv2_1945_2_85 73372 74475 + 3.A.1.105.4
TC HRGMv2_1945_2 HRGMv2_1945_2_86 74587 75291 - 2.A.122.1.7
pfam HRGMv2_1945_2 HRGMv2_1945_2_87 75288 75710 - LrgA
pfam HRGMv2_1945_2 HRGMv2_1945_2_88 75730 77316 - GTP_EFTU | MMR_HSR1 | RF3_C | EF-G_D2
CAZyme HRGMv2_1945_2 HRGMv2_1945_2_89 77462 78586 + GT4
Gene ID: HRGMv2_1945_2_81
Type: TC
Location: 69719 - 70609 (+)
Gene ID: HRGMv2_1945_2_82
Type: TC
Location: 70617 - 71540 (+)
Gene ID: HRGMv2_1945_2_83
Type: TC
Location: 71533 - 72273 (+)
Gene ID: HRGMv2_1945_2_84
Type: TC
Location: 72212 - 73369 (+)
Gene ID: HRGMv2_1945_2_85
Type: TC
Location: 73372 - 74475 (+)
Gene ID: HRGMv2_1945_2_86
Type: TC
Location: 74587 - 75291 (-)
Gene ID: HRGMv2_1945_2_87
Type: pfam
Location: 75288 - 75710 (-)
Gene ID: HRGMv2_1945_2_88
Type: pfam
Location: 75730 - 77316 (-)
Gene ID: HRGMv2_1945_2_89
Type: CAZyme
Location: 77462 - 78586 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1945_2_83 vegetarian > vegan 1.58287 0.02242

🧭 Explore Read Mapping of CGC

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