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Cluster: HRGMv2_1944_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1944_1 HRGMv2_1944_1_179 203132 206422 + 1.B.14.6.3
pfam HRGMv2_1944_1 HRGMv2_1944_1_180 206561 208084 + tRNA-synt_1c | Anticodon_2
TC HRGMv2_1944_1 HRGMv2_1944_1_181 208358 208708 + 3.D.1.8.1
TC HRGMv2_1944_1 HRGMv2_1944_1_182 208720 209301 + 3.D.1.1.1
TC HRGMv2_1944_1 HRGMv2_1944_1_183 209333 210964 + 3.D.1.5.1
TC HRGMv2_1944_1 HRGMv2_1944_1_184 211003 212079 + 3.D.1.5.1
STP HRGMv2_1944_1 HRGMv2_1944_1_185 212104 212625 + Fer4 | Fer4
TC HRGMv2_1944_1 HRGMv2_1944_1_186 212625 213140 + 3.D.9.1.1
TC HRGMv2_1944_1 HRGMv2_1944_1_187 213145 213456 + 3.D.1.8.1
TC HRGMv2_1944_1 HRGMv2_1944_1_188 213477 215387 + 3.D.9.1.1
TC HRGMv2_1944_1 HRGMv2_1944_1_189 215420 216913 + 3.D.1.5.1
TC HRGMv2_1944_1 HRGMv2_1944_1_190 216942 218369 + 3.D.1.2.1
pfam HRGMv2_1944_1 HRGMv2_1944_1_191 218588 219319 + DnaJ | TerB
pfam HRGMv2_1944_1 HRGMv2_1944_1_192 219627 220103 - DUF1573 | HYDIN_VesB_CFA65-like_Ig
CAZyme HRGMv2_1944_1 HRGMv2_1944_1_193 220090 222213 - GH163
pfam HRGMv2_1944_1 HRGMv2_1944_1_194 222188 225031 - TPR_21 | YaiO
CAZyme HRGMv2_1944_1 HRGMv2_1944_1_195 225045 226466 - GT2
Gene ID: HRGMv2_1944_1_179
Type: TC
Location: 203132 - 206422 (+)
Gene ID: HRGMv2_1944_1_180
Type: pfam
Location: 206561 - 208084 (+)
Gene ID: HRGMv2_1944_1_181
Type: TC
Location: 208358 - 208708 (+)
Gene ID: HRGMv2_1944_1_182
Type: TC
Location: 208720 - 209301 (+)
Gene ID: HRGMv2_1944_1_183
Type: TC
Location: 209333 - 210964 (+)
Gene ID: HRGMv2_1944_1_184
Type: TC
Location: 211003 - 212079 (+)
Gene ID: HRGMv2_1944_1_185
Type: STP
Location: 212104 - 212625 (+)
Gene ID: HRGMv2_1944_1_186
Type: TC
Location: 212625 - 213140 (+)
Gene ID: HRGMv2_1944_1_187
Type: TC
Location: 213145 - 213456 (+)
Gene ID: HRGMv2_1944_1_188
Type: TC
Location: 213477 - 215387 (+)
Gene ID: HRGMv2_1944_1_189
Type: TC
Location: 215420 - 216913 (+)
Gene ID: HRGMv2_1944_1_190
Type: TC
Location: 216942 - 218369 (+)
Gene ID: HRGMv2_1944_1_191
Type: pfam
Location: 218588 - 219319 (+)
Gene ID: HRGMv2_1944_1_192
Type: pfam
Location: 219627 - 220103 (-)
Gene ID: HRGMv2_1944_1_193
Type: CAZyme
Location: 220090 - 222213 (-)
Gene ID: HRGMv2_1944_1_194
Type: pfam
Location: 222188 - 225031 (-)
Gene ID: HRGMv2_1944_1_195
Type: CAZyme
Location: 225045 - 226466 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1944_1_186 vegetarian > vegan 1.53198 0.04322
HRGMv2_1944_1_187 vegetarian > vegan 1.28812 0.04322
HRGMv2_1944_1_191 vegetarian > vegan 1.13891 0.04322

🧭 Explore Read Mapping of CGC

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