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Cluster: HRGMv2_1944_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1944_1 HRGMv2_1944_1_81 90507 91481 + GT2
pfam HRGMv2_1944_1 HRGMv2_1944_1_82 91576 93294 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_1944_1 HRGMv2_1944_1_83 93404 94375 - GH73
peptidase HRGMv2_1944_1 HRGMv2_1944_1_84 94383 95015 - A08.UPW
TC HRGMv2_1944_1 HRGMv2_1944_1_85 95311 95994 + 1.A.1.17.2
pfam HRGMv2_1944_1 HRGMv2_1944_1_86 96108 97856 + tRNA-synt_2 | tRNA_anti-codon | GAD
TC HRGMv2_1944_1 HRGMv2_1944_1_87 97918 99789 + 2.A.49.6.3
Gene ID: HRGMv2_1944_1_81
Type: CAZyme
Location: 90507 - 91481 (+)
Gene ID: HRGMv2_1944_1_82
Type: pfam
Location: 91576 - 93294 (+)
Gene ID: HRGMv2_1944_1_83
Type: CAZyme
Location: 93404 - 94375 (-)
Gene ID: HRGMv2_1944_1_84
Type: peptidase
Location: 94383 - 95015 (-)
Gene ID: HRGMv2_1944_1_85
Type: TC
Location: 95311 - 95994 (+)
Gene ID: HRGMv2_1944_1_86
Type: pfam
Location: 96108 - 97856 (+)
Gene ID: HRGMv2_1944_1_87
Type: TC
Location: 97918 - 99789 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1944_1_81 vegetarian > vegan 1.14281 0.04322
HRGMv2_1944_1_85 vegetarian > vegan 1.09345 0.04322

🧭 Explore Read Mapping of CGC

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