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Cluster: HRGMv2_1944_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1944_7 HRGMv2_1944_7_56 70527 71651 - GT4
pfam HRGMv2_1944_7 HRGMv2_1944_7_57 71728 73383 + GTP_EFTU | MMR_HSR1 | RF3_C | EF-G_D2
TC HRGMv2_1944_7 HRGMv2_1944_7_58 73402 73824 + 1.E.14.1.17
TC HRGMv2_1944_7 HRGMv2_1944_7_59 73821 74525 + 2.A.122.1.7
TC HRGMv2_1944_7 HRGMv2_1944_7_60 74637 75740 - 3.A.1.105.4
TC HRGMv2_1944_7 HRGMv2_1944_7_61 75743 76900 - 3.A.1.105.4
TC HRGMv2_1944_7 HRGMv2_1944_7_62 76839 77579 - 3.A.1.105.15
TC HRGMv2_1944_7 HRGMv2_1944_7_63 77572 78495 - 3.A.1.105.15
TC HRGMv2_1944_7 HRGMv2_1944_7_64 78503 79393 - 3.A.1.105.4
Gene ID: HRGMv2_1944_7_56
Type: CAZyme
Location: 70527 - 71651 (-)
Gene ID: HRGMv2_1944_7_57
Type: pfam
Location: 71728 - 73383 (+)
Gene ID: HRGMv2_1944_7_58
Type: TC
Location: 73402 - 73824 (+)
Gene ID: HRGMv2_1944_7_59
Type: TC
Location: 73821 - 74525 (+)
Gene ID: HRGMv2_1944_7_60
Type: TC
Location: 74637 - 75740 (-)
Gene ID: HRGMv2_1944_7_61
Type: TC
Location: 75743 - 76900 (-)
Gene ID: HRGMv2_1944_7_62
Type: TC
Location: 76839 - 77579 (-)
Gene ID: HRGMv2_1944_7_63
Type: TC
Location: 77572 - 78495 (-)
Gene ID: HRGMv2_1944_7_64
Type: TC
Location: 78503 - 79393 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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