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Cluster: HRGMv2_1939_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1939_7 HRGMv2_1939_7_46 39752 40651 + 2.A.7.3.28
pfam HRGMv2_1939_7 HRGMv2_1939_7_47 41017 42426 + MTTB
TC HRGMv2_1939_7 HRGMv2_1939_7_48 42535 43812 + 2.A.1.52.4
TC HRGMv2_1939_7 HRGMv2_1939_7_49 43979 45598 + 2.A.15.2.3
TC HRGMv2_1939_7 HRGMv2_1939_7_50 45763 47349 + 2.A.15.2.3
TC HRGMv2_1939_7 HRGMv2_1939_7_51 47448 48881 - 3.A.23.1.1
TC HRGMv2_1939_7 HRGMv2_1939_7_52 48993 50357 - 2.A.66.10.1
CAZyme HRGMv2_1939_7 HRGMv2_1939_7_53 50362 51456 - GT4
CAZyme HRGMv2_1939_7 HRGMv2_1939_7_54 51470 52543 - GT4
Gene ID: HRGMv2_1939_7_46
Type: TC
Location: 39752 - 40651 (+)
Gene ID: HRGMv2_1939_7_47
Type: pfam
Location: 41017 - 42426 (+)
Gene ID: HRGMv2_1939_7_48
Type: TC
Location: 42535 - 43812 (+)
Gene ID: HRGMv2_1939_7_49
Type: TC
Location: 43979 - 45598 (+)
Gene ID: HRGMv2_1939_7_50
Type: TC
Location: 45763 - 47349 (+)
Gene ID: HRGMv2_1939_7_51
Type: TC
Location: 47448 - 48881 (-)
Gene ID: HRGMv2_1939_7_52
Type: TC
Location: 48993 - 50357 (-)
Gene ID: HRGMv2_1939_7_53
Type: CAZyme
Location: 50362 - 51456 (-)
Gene ID: HRGMv2_1939_7_54
Type: CAZyme
Location: 51470 - 52543 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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