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Cluster: HRGMv2_1937_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1937_1 HRGMv2_1937_1_556 560603 561556 - GT2
pfam HRGMv2_1937_1 HRGMv2_1937_1_557 561597 562652 - Acyl_transf_3
pfam HRGMv2_1937_1 HRGMv2_1937_1_558 562675 564486 - DUF6056
TC HRGMv2_1937_1 HRGMv2_1937_1_559 564503 565900 - 9.B.18.1.1
CAZyme HRGMv2_1937_1 HRGMv2_1937_1_560 565921 566778 - GT2
CAZyme HRGMv2_1937_1 HRGMv2_1937_1_561 566858 567832 - GT2
pfam HRGMv2_1937_1 HRGMv2_1937_1_562 568629 569036 + Transposase_mut
CAZyme HRGMv2_1937_1 HRGMv2_1937_1_563 569811 570743 - GT2
pfam HRGMv2_1937_1 HRGMv2_1937_1_564 570740 572551 - DUF6020
CAZyme HRGMv2_1937_1 HRGMv2_1937_1_565 572640 573536 - GH73
Gene ID: HRGMv2_1937_1_556
Type: CAZyme
Location: 560603 - 561556 (-)
Gene ID: HRGMv2_1937_1_557
Type: pfam
Location: 561597 - 562652 (-)
Gene ID: HRGMv2_1937_1_558
Type: pfam
Location: 562675 - 564486 (-)
Gene ID: HRGMv2_1937_1_559
Type: TC
Location: 564503 - 565900 (-)
Gene ID: HRGMv2_1937_1_560
Type: CAZyme
Location: 565921 - 566778 (-)
Gene ID: HRGMv2_1937_1_561
Type: CAZyme
Location: 566858 - 567832 (-)
Gene ID: HRGMv2_1937_1_562
Type: pfam
Location: 568629 - 569036 (+)
Gene ID: HRGMv2_1937_1_563
Type: CAZyme
Location: 569811 - 570743 (-)
Gene ID: HRGMv2_1937_1_564
Type: pfam
Location: 570740 - 572551 (-)
Gene ID: HRGMv2_1937_1_565
Type: CAZyme
Location: 572640 - 573536 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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