Cluster: HRGMv2_1937_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1937
- CGC Family ID: CGCFAM_09911
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1937_1 | HRGMv2_1937_1_124 | 101336 | 102592 | + | 2.A.1.62.2 |
| pfam | HRGMv2_1937_1 | HRGMv2_1937_1_125 | 102652 | 103518 | - | PhzC-PhzF |
| TF | HRGMv2_1937_1 | HRGMv2_1937_1_126 | 103530 | 104336 | - | HTH_3 |
| TC | HRGMv2_1937_1 | HRGMv2_1937_1_127 | 104546 | 107197 | - | 3.A.3.4.1 |
| pfam | HRGMv2_1937_1 | HRGMv2_1937_1_128 | 107790 | 108269 | + | SelR |
| CAZyme | HRGMv2_1937_1 | HRGMv2_1937_1_129 | 108351 | 110345 | + | GH13_8 |
Gene ID: HRGMv2_1937_1_124
Type: TC
Location: 101336 - 102592 (+)
Type: TC
Location: 101336 - 102592 (+)
Gene ID: HRGMv2_1937_1_125
Type: pfam
Location: 102652 - 103518 (-)
Type: pfam
Location: 102652 - 103518 (-)
Gene ID: HRGMv2_1937_1_126
Type: TF
Location: 103530 - 104336 (-)
Type: TF
Location: 103530 - 104336 (-)
Gene ID: HRGMv2_1937_1_127
Type: TC
Location: 104546 - 107197 (-)
Type: TC
Location: 104546 - 107197 (-)
Gene ID: HRGMv2_1937_1_128
Type: pfam
Location: 107790 - 108269 (+)
Type: pfam
Location: 107790 - 108269 (+)
Gene ID: HRGMv2_1937_1_129
Type: CAZyme
Location: 108351 - 110345 (+)
Type: CAZyme
Location: 108351 - 110345 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Eubacteriales
Family
Eubacteriaceae
Genus
Eubacterium
Species
Eubacterium limosum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.