Cluster: HRGMv2_1936_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1936
- CGC Family ID: CGCFAM_02293
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1936_5 | HRGMv2_1936_5_21 | 19177 | 20577 | - | GH1 |
| TC | HRGMv2_1936_5 | HRGMv2_1936_5_22 | 20647 | 22296 | - | 4.A.3.1.1 |
| TC | HRGMv2_1936_5 | HRGMv2_1936_5_23 | 22309 | 22614 | - | 4.A.3.1.1 |
| TF | HRGMv2_1936_5 | HRGMv2_1936_5_24 | 22842 | 23597 | + | HTH_DeoR |
| TC | HRGMv2_1936_5 | HRGMv2_1936_5_25 | 23654 | 24559 | - | 8.A.21.2.2 |
Gene ID: HRGMv2_1936_5_21
Type: CAZyme
Location: 19177 - 20577 (-)
Type: CAZyme
Location: 19177 - 20577 (-)
Gene ID: HRGMv2_1936_5_22
Type: TC
Location: 20647 - 22296 (-)
Type: TC
Location: 20647 - 22296 (-)
Gene ID: HRGMv2_1936_5_23
Type: TC
Location: 22309 - 22614 (-)
Type: TC
Location: 22309 - 22614 (-)
Gene ID: HRGMv2_1936_5_24
Type: TF
Location: 22842 - 23597 (+)
Type: TF
Location: 22842 - 23597 (+)
Gene ID: HRGMv2_1936_5_25
Type: TC
Location: 23654 - 24559 (-)
Type: TC
Location: 23654 - 24559 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1936_5_21 | vegan > omnivore | 1.42636 | 0.01489 |
| HRGMv2_1936_5_22 | vegan > omnivore | 2.24157 | 0.01489 |
| HRGMv2_1936_5_23 | vegan > omnivore | 1.38817 | 0.01489 |