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Cluster: HRGMv2_1936_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1936_4 HRGMv2_1936_4_25 26205 26849 - 2.A.115.2.13
CAZyme HRGMv2_1936_4 HRGMv2_1936_4_26 26833 28269 - GH1
pfam HRGMv2_1936_4 HRGMv2_1936_4_27 28272 28610 - PTS_IIA
TC HRGMv2_1936_4 HRGMv2_1936_4_28 28612 29841 - 4.A.3.2.3
pfam HRGMv2_1936_4 HRGMv2_1936_4_29 29856 30167 - PTS_IIB
TF HRGMv2_1936_4 HRGMv2_1936_4_30 30461 32377 + HTH_11 | Mga
CAZyme HRGMv2_1936_4 HRGMv2_1936_4_31 32440 34080 - GH13_29
TC HRGMv2_1936_4 HRGMv2_1936_4_32 34095 35978 - 4.A.1.2.13
TF HRGMv2_1936_4 HRGMv2_1936_4_33 36090 36800 - GntR
pfam HRGMv2_1936_4 HRGMv2_1936_4_34 36892 37371 - LuxS
TC HRGMv2_1936_4 HRGMv2_1936_4_35 37364 38665 - 2.A.35.1.5
Gene ID: HRGMv2_1936_4_25
Type: TC
Location: 26205 - 26849 (-)
Gene ID: HRGMv2_1936_4_26
Type: CAZyme
Location: 26833 - 28269 (-)
Gene ID: HRGMv2_1936_4_27
Type: pfam
Location: 28272 - 28610 (-)
Gene ID: HRGMv2_1936_4_28
Type: TC
Location: 28612 - 29841 (-)
Gene ID: HRGMv2_1936_4_29
Type: pfam
Location: 29856 - 30167 (-)
Gene ID: HRGMv2_1936_4_30
Type: TF
Location: 30461 - 32377 (+)
Gene ID: HRGMv2_1936_4_31
Type: CAZyme
Location: 32440 - 34080 (-)
Gene ID: HRGMv2_1936_4_32
Type: TC
Location: 34095 - 35978 (-)
Gene ID: HRGMv2_1936_4_33
Type: TF
Location: 36090 - 36800 (-)
Gene ID: HRGMv2_1936_4_34
Type: pfam
Location: 36892 - 37371 (-)
Gene ID: HRGMv2_1936_4_35
Type: TC
Location: 37364 - 38665 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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