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Cluster: HRGMv2_1936_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1936_22 HRGMv2_1936_22_15 16633 18045 + GH1
TC HRGMv2_1936_22 HRGMv2_1936_22_16 18181 19491 + 3.D.6.1.2
TC HRGMv2_1936_22 HRGMv2_1936_22_17 19501 20430 + 3.D.6.1.2
TC HRGMv2_1936_22 HRGMv2_1936_22_18 20427 21053 + 3.D.6.1.2
TC HRGMv2_1936_22 HRGMv2_1936_22_19 21046 21744 + 3.D.6.1.2
TC HRGMv2_1936_22 HRGMv2_1936_22_20 21741 22313 + 3.D.6.1.2
TC HRGMv2_1936_22 HRGMv2_1936_22_21 22325 23110 + 3.D.6.1.3
pfam HRGMv2_1936_22 HRGMv2_1936_22_22 23132 24100 - ApbE
pfam HRGMv2_1936_22 HRGMv2_1936_22_23 24139 24498 + NusG_II
TC HRGMv2_1936_22 HRGMv2_1936_22_24 24482 24991 + 2.A.87.3.2
TC HRGMv2_1936_22 HRGMv2_1936_22_25 25059 26417 + 2.A.22.5.3
Gene ID: HRGMv2_1936_22_15
Type: CAZyme
Location: 16633 - 18045 (+)
Gene ID: HRGMv2_1936_22_16
Type: TC
Location: 18181 - 19491 (+)
Gene ID: HRGMv2_1936_22_17
Type: TC
Location: 19501 - 20430 (+)
Gene ID: HRGMv2_1936_22_18
Type: TC
Location: 20427 - 21053 (+)
Gene ID: HRGMv2_1936_22_19
Type: TC
Location: 21046 - 21744 (+)
Gene ID: HRGMv2_1936_22_20
Type: TC
Location: 21741 - 22313 (+)
Gene ID: HRGMv2_1936_22_21
Type: TC
Location: 22325 - 23110 (+)
Gene ID: HRGMv2_1936_22_22
Type: pfam
Location: 23132 - 24100 (-)
Gene ID: HRGMv2_1936_22_23
Type: pfam
Location: 24139 - 24498 (+)
Gene ID: HRGMv2_1936_22_24
Type: TC
Location: 24482 - 24991 (+)
Gene ID: HRGMv2_1936_22_25
Type: TC
Location: 25059 - 26417 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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