Cluster: HRGMv2_1936_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1936
- CGC Family ID: CGCFAM_01534
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1936_18 | HRGMv2_1936_18_28 | 35883 | 36890 | - | 8.A.5.1.6 |
| NULL(UNKNOWN) | HRGMv2_1936_18 | HRGMv2_1936_18_29 | 37036 | 37167 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1936_18 | HRGMv2_1936_18_30 | 37190 | 38002 | - | LCM |
| CAZyme | HRGMv2_1936_18 | HRGMv2_1936_18_31 | 38382 | 39869 | - | GH1 |
Gene ID: HRGMv2_1936_18_28
Type: TC
Location: 35883 - 36890 (-)
Type: TC
Location: 35883 - 36890 (-)
Gene ID: HRGMv2_1936_18_29
Type:
Location: 37036 - 37167 (-)
Type:
Location: 37036 - 37167 (-)
Gene ID: HRGMv2_1936_18_30
Type: pfam
Location: 37190 - 38002 (-)
Type: pfam
Location: 37190 - 38002 (-)
Gene ID: HRGMv2_1936_18_31
Type: CAZyme
Location: 38382 - 39869 (-)
Type: CAZyme
Location: 38382 - 39869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1936_18_31 | vegan > omnivore | 2.15302 | 0.01489 |