Cluster: HRGMv2_1936_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1936
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1936_18 | HRGMv2_1936_18_13 | 12057 | 17204 | - | CBM32 | CBM32 | CBM32 | CBM32 | GH20 |
| peptidase | HRGMv2_1936_18 | HRGMv2_1936_18_14 | 17414 | 18151 | - | C39.UPW |
| TC | HRGMv2_1936_18 | HRGMv2_1936_18_15 | 18236 | 19342 | - | 2.A.21.9.2 |
| TF | HRGMv2_1936_18 | HRGMv2_1936_18_16 | 19332 | 20018 | - | Trans_reg_C |
| pfam | HRGMv2_1936_18 | HRGMv2_1936_18_17 | 20102 | 21196 | - | Aldo_ket_red | Fer4_17 |
| TC | HRGMv2_1936_18 | HRGMv2_1936_18_18 | 21385 | 23262 | - | 4.A.1.2.6 |
Gene ID: HRGMv2_1936_18_13
Type: CAZyme
Location: 12057 - 17204 (-)
Type: CAZyme
Location: 12057 - 17204 (-)
Gene ID: HRGMv2_1936_18_14
Type: peptidase
Location: 17414 - 18151 (-)
Type: peptidase
Location: 17414 - 18151 (-)
Gene ID: HRGMv2_1936_18_15
Type: TC
Location: 18236 - 19342 (-)
Type: TC
Location: 18236 - 19342 (-)
Gene ID: HRGMv2_1936_18_16
Type: TF
Location: 19332 - 20018 (-)
Type: TF
Location: 19332 - 20018 (-)
Gene ID: HRGMv2_1936_18_17
Type: pfam
Location: 20102 - 21196 (-)
Type: pfam
Location: 20102 - 21196 (-)
Gene ID: HRGMv2_1936_18_18
Type: TC
Location: 21385 - 23262 (-)
Type: TC
Location: 21385 - 23262 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1936_18_18 | vegan > omnivore | 2.12852 | 0.01489 |