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Cluster: HRGMv2_1936_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1936_14 HRGMv2_1936_14_20 20343 21737 + 8.A.3.1.2
TC HRGMv2_1936_14 HRGMv2_1936_14_21 21737 23140 + 8.A.3.3.4
TC HRGMv2_1936_14 HRGMv2_1936_14_22 23141 23749 + 9.B.18.1.3
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_23 23721 24821 + GT4
pfam HRGMv2_1936_14 HRGMv2_1936_14_24 24837 25940 + EpsG
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_25 25937 26905 + GT2
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_26 26909 27799 + GT2
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_27 27814 28941 + GT4
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_28 29791 30783 + GT2
pfam HRGMv2_1936_14 HRGMv2_1936_14_29 30800 32317 + Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_30 32335 33309 + GT2
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_31 33339 34424 + GT2
pfam HRGMv2_1936_14 HRGMv2_1936_14_32 34459 35541 + PS_pyruv_trans
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_33 35557 36555 + GT32
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_34 36562 37476 + GT2
pfam HRGMv2_1936_14 HRGMv2_1936_14_35 37488 38417 + Caps_synth
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_36 38414 39379 + GT2
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_37 39390 40358 + GT2
TC HRGMv2_1936_14 HRGMv2_1936_14_38 40371 42158 + 3.A.1.135.7
pfam HRGMv2_1936_14 HRGMv2_1936_14_39 42184 43209 + Acyl_transf_3
CAZyme HRGMv2_1936_14 HRGMv2_1936_14_40 43252 44076 + GT2
Gene ID: HRGMv2_1936_14_20
Type: TC
Location: 20343 - 21737 (+)
Gene ID: HRGMv2_1936_14_21
Type: TC
Location: 21737 - 23140 (+)
Gene ID: HRGMv2_1936_14_22
Type: TC
Location: 23141 - 23749 (+)
Gene ID: HRGMv2_1936_14_23
Type: CAZyme
Location: 23721 - 24821 (+)
Gene ID: HRGMv2_1936_14_24
Type: pfam
Location: 24837 - 25940 (+)
Gene ID: HRGMv2_1936_14_25
Type: CAZyme
Location: 25937 - 26905 (+)
Gene ID: HRGMv2_1936_14_26
Type: CAZyme
Location: 26909 - 27799 (+)
Gene ID: HRGMv2_1936_14_27
Type: CAZyme
Location: 27814 - 28941 (+)
Gene ID: HRGMv2_1936_14_28
Type: CAZyme
Location: 29791 - 30783 (+)
Gene ID: HRGMv2_1936_14_29
Type: pfam
Location: 30800 - 32317 (+)
Gene ID: HRGMv2_1936_14_30
Type: CAZyme
Location: 32335 - 33309 (+)
Gene ID: HRGMv2_1936_14_31
Type: CAZyme
Location: 33339 - 34424 (+)
Gene ID: HRGMv2_1936_14_32
Type: pfam
Location: 34459 - 35541 (+)
Gene ID: HRGMv2_1936_14_33
Type: CAZyme
Location: 35557 - 36555 (+)
Gene ID: HRGMv2_1936_14_34
Type: CAZyme
Location: 36562 - 37476 (+)
Gene ID: HRGMv2_1936_14_35
Type: pfam
Location: 37488 - 38417 (+)
Gene ID: HRGMv2_1936_14_36
Type: CAZyme
Location: 38414 - 39379 (+)
Gene ID: HRGMv2_1936_14_37
Type: CAZyme
Location: 39390 - 40358 (+)
Gene ID: HRGMv2_1936_14_38
Type: TC
Location: 40371 - 42158 (+)
Gene ID: HRGMv2_1936_14_39
Type: pfam
Location: 42184 - 43209 (+)
Gene ID: HRGMv2_1936_14_40
Type: CAZyme
Location: 43252 - 44076 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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