Cluster: HRGMv2_1936_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1936
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1936_14 | HRGMv2_1936_14_3 | 1588 | 2853 | + | 2.A.23.1.5 |
| pfam | HRGMv2_1936_14 | HRGMv2_1936_14_4 | 3080 | 3904 | + | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_1936_14 | HRGMv2_1936_14_5 | 3916 | 5556 | + | GH13_31 |
| pfam | HRGMv2_1936_14 | HRGMv2_1936_14_6 | 5650 | 6837 | + | NTP_transf_5 |
| STP | HRGMv2_1936_14 | HRGMv2_1936_14_7 | 6853 | 8307 | + | SBP_bac_3 |
| TC | HRGMv2_1936_14 | HRGMv2_1936_14_8 | 8526 | 10394 | + | 9.B.18.2.1 |
Gene ID: HRGMv2_1936_14_3
Type: TC
Location: 1588 - 2853 (+)
Type: TC
Location: 1588 - 2853 (+)
Gene ID: HRGMv2_1936_14_4
Type: pfam
Location: 3080 - 3904 (+)
Type: pfam
Location: 3080 - 3904 (+)
Gene ID: HRGMv2_1936_14_5
Type: CAZyme
Location: 3916 - 5556 (+)
Type: CAZyme
Location: 3916 - 5556 (+)
Gene ID: HRGMv2_1936_14_6
Type: pfam
Location: 5650 - 6837 (+)
Type: pfam
Location: 5650 - 6837 (+)
Gene ID: HRGMv2_1936_14_7
Type: STP
Location: 6853 - 8307 (+)
Type: STP
Location: 6853 - 8307 (+)
Gene ID: HRGMv2_1936_14_8
Type: TC
Location: 8526 - 10394 (+)
Type: TC
Location: 8526 - 10394 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.