Cluster: HRGMv2_1936_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1936
- CGC Family ID: CGCFAM_06077
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1936_12 | HRGMv2_1936_12_6 | 4866 | 6353 | + | GH1 |
| pfam | HRGMv2_1936_12 | HRGMv2_1936_12_7 | 6350 | 6811 | + | RbsD_FucU |
| pfam | HRGMv2_1936_12 | HRGMv2_1936_12_8 | 6808 | 7368 | + | Hexapep | Mac | Hexapep_2 | Hexapep_2 |
| TC | HRGMv2_1936_12 | HRGMv2_1936_12_9 | 7555 | 7854 | + | 4.A.3.2.6 |
Gene ID: HRGMv2_1936_12_6
Type: CAZyme
Location: 4866 - 6353 (+)
Type: CAZyme
Location: 4866 - 6353 (+)
Gene ID: HRGMv2_1936_12_7
Type: pfam
Location: 6350 - 6811 (+)
Type: pfam
Location: 6350 - 6811 (+)
Gene ID: HRGMv2_1936_12_8
Type: pfam
Location: 6808 - 7368 (+)
Type: pfam
Location: 6808 - 7368 (+)
Gene ID: HRGMv2_1936_12_9
Type: TC
Location: 7555 - 7854 (+)
Type: TC
Location: 7555 - 7854 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1936_12_7 | vegan > omnivore | 2.40811 | 0.01489 |