Cluster: HRGMv2_1936_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1936
- CGC Family ID: CGCFAM_02350
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1936_2 | HRGMv2_1936_2_65 | 69750 | 72146 | - | GT35 |
| CAZyme | HRGMv2_1936_2 | HRGMv2_1936_2_66 | 72139 | 74058 | - | CBM48 | GH13_9 |
| NULL(UNKNOWN) | HRGMv2_1936_2 | HRGMv2_1936_2_67 | 74151 | 75140 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1936_2 | HRGMv2_1936_2_68 | 75271 | 76533 | + | AI-2E_transport |
| TC | HRGMv2_1936_2 | HRGMv2_1936_2_69 | 76544 | 78427 | - | 3.A.1.135.5 |
| TC | HRGMv2_1936_2 | HRGMv2_1936_2_70 | 78417 | 80171 | - | 3.A.1.135.5 |
Gene ID: HRGMv2_1936_2_65
Type: CAZyme
Location: 69750 - 72146 (-)
Type: CAZyme
Location: 69750 - 72146 (-)
Gene ID: HRGMv2_1936_2_66
Type: CAZyme
Location: 72139 - 74058 (-)
Type: CAZyme
Location: 72139 - 74058 (-)
Gene ID: HRGMv2_1936_2_67
Type:
Location: 74151 - 75140 (-)
Type:
Location: 74151 - 75140 (-)
Gene ID: HRGMv2_1936_2_68
Type: pfam
Location: 75271 - 76533 (+)
Type: pfam
Location: 75271 - 76533 (+)
Gene ID: HRGMv2_1936_2_69
Type: TC
Location: 76544 - 78427 (-)
Type: TC
Location: 76544 - 78427 (-)
Gene ID: HRGMv2_1936_2_70
Type: TC
Location: 78417 - 80171 (-)
Type: TC
Location: 78417 - 80171 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.