Cluster: HRGMv2_1934_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1934
- CGC Family ID: CGCFAM_00092
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1934_7 | HRGMv2_1934_7_45 | 47489 | 48385 | + | 3.A.1.1.21 |
| TC | HRGMv2_1934_7 | HRGMv2_1934_7_46 | 48397 | 49275 | + | 3.A.1.1.18 |
| pfam | HRGMv2_1934_7 | HRGMv2_1934_7_47 | 49288 | 49452 | + | DUF6903 |
| TC | HRGMv2_1934_7 | HRGMv2_1934_7_48 | 49464 | 50555 | + | 3.A.1.1.26 |
| pfam | HRGMv2_1934_7 | HRGMv2_1934_7_49 | 50571 | 52073 | + | GalP_UDP_transf | GalP_UDP_tr_C |
| CAZyme | HRGMv2_1934_7 | HRGMv2_1934_7_50 | 52070 | 54211 | + | GH112 |
Gene ID: HRGMv2_1934_7_45
Type: TC
Location: 47489 - 48385 (+)
Type: TC
Location: 47489 - 48385 (+)
Gene ID: HRGMv2_1934_7_46
Type: TC
Location: 48397 - 49275 (+)
Type: TC
Location: 48397 - 49275 (+)
Gene ID: HRGMv2_1934_7_47
Type: pfam
Location: 49288 - 49452 (+)
Type: pfam
Location: 49288 - 49452 (+)
Gene ID: HRGMv2_1934_7_48
Type: TC
Location: 49464 - 50555 (+)
Type: TC
Location: 49464 - 50555 (+)
Gene ID: HRGMv2_1934_7_49
Type: pfam
Location: 50571 - 52073 (+)
Type: pfam
Location: 50571 - 52073 (+)
Gene ID: HRGMv2_1934_7_50
Type: CAZyme
Location: 52070 - 54211 (+)
Type: CAZyme
Location: 52070 - 54211 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Massilicoli
Species
Massilicoli timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.