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Cluster: HRGMv2_1934_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1934_5 HRGMv2_1934_5_53 58986 60212 + GH3
pfam HRGMv2_1934_5 HRGMv2_1934_5_54 60572 61510 + Fic
CAZyme HRGMv2_1934_5 HRGMv2_1934_5_55 61643 62347 - GT51
STP HRGMv2_1934_5 HRGMv2_1934_5_56 62949 64244 - TPR_2
NULL(UNKNOWN) HRGMv2_1934_5 HRGMv2_1934_5_57 64261 65523 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1934_5 HRGMv2_1934_5_58 65747 66706 + 9.B.10.1.1
pfam HRGMv2_1934_5 HRGMv2_1934_5_59 66703 67638 + cobW | DUF1980_C
STP HRGMv2_1934_5 HRGMv2_1934_5_60 67897 69312 + Pribosyltran
TC HRGMv2_1934_5 HRGMv2_1934_5_61 69472 70344 + 2.A.115.1.1
NULL(UNKNOWN) HRGMv2_1934_5 HRGMv2_1934_5_62 70472 71047 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_1934_5 HRGMv2_1934_5_63 71342 72316 + SBP_bac_1
TC HRGMv2_1934_5 HRGMv2_1934_5_64 72304 73107 + 3.A.1.11.1
TC HRGMv2_1934_5 HRGMv2_1934_5_65 73097 74677 + 3.A.1.20.2
Gene ID: HRGMv2_1934_5_53
Type: CAZyme
Location: 58986 - 60212 (+)
Gene ID: HRGMv2_1934_5_54
Type: pfam
Location: 60572 - 61510 (+)
Gene ID: HRGMv2_1934_5_55
Type: CAZyme
Location: 61643 - 62347 (-)
Gene ID: HRGMv2_1934_5_56
Type: STP
Location: 62949 - 64244 (-)
Gene ID: HRGMv2_1934_5_57
Type:
Location: 64261 - 65523 (-)
Gene ID: HRGMv2_1934_5_58
Type: TC
Location: 65747 - 66706 (+)
Gene ID: HRGMv2_1934_5_59
Type: pfam
Location: 66703 - 67638 (+)
Gene ID: HRGMv2_1934_5_60
Type: STP
Location: 67897 - 69312 (+)
Gene ID: HRGMv2_1934_5_61
Type: TC
Location: 69472 - 70344 (+)
Gene ID: HRGMv2_1934_5_62
Type:
Location: 70472 - 71047 (-)
Gene ID: HRGMv2_1934_5_63
Type: STP
Location: 71342 - 72316 (+)
Gene ID: HRGMv2_1934_5_64
Type: TC
Location: 72304 - 73107 (+)
Gene ID: HRGMv2_1934_5_65
Type: TC
Location: 73097 - 74677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1934_5_54 omnivore > vegan 2.00352 0.03622

🧭 Explore Read Mapping of CGC

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