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Cluster: HRGMv2_1923_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1923_5 HRGMv2_1923_5_38 36043 36516 - 4.A.1.1.11
TF HRGMv2_1923_5 HRGMv2_1923_5_39 36594 37373 + HTH_6
TF HRGMv2_1923_5 HRGMv2_1923_5_40 37370 38128 + HTH_6
TC HRGMv2_1923_5 HRGMv2_1923_5_41 38153 39622 - 4.A.1.1.3
CAZyme HRGMv2_1923_5 HRGMv2_1923_5_42 39732 41057 - GH4
pfam HRGMv2_1923_5 HRGMv2_1923_5_43 41256 41879 - R3H | KH_KhpA-B | Jag_N
TC HRGMv2_1923_5 HRGMv2_1923_5_44 41899 42900 - 2.A.9.3.2
pfam HRGMv2_1923_5 HRGMv2_1923_5_45 42949 43278 - Ribonuclease_P
pfam HRGMv2_1923_5 HRGMv2_1923_5_46 43327 43461 - Ribosomal_L34
TC HRGMv2_1923_5 HRGMv2_1923_5_47 43607 44845 - 2.A.49.9.3
Gene ID: HRGMv2_1923_5_38
Type: TC
Location: 36043 - 36516 (-)
Gene ID: HRGMv2_1923_5_39
Type: TF
Location: 36594 - 37373 (+)
Gene ID: HRGMv2_1923_5_40
Type: TF
Location: 37370 - 38128 (+)
Gene ID: HRGMv2_1923_5_41
Type: TC
Location: 38153 - 39622 (-)
Gene ID: HRGMv2_1923_5_42
Type: CAZyme
Location: 39732 - 41057 (-)
Gene ID: HRGMv2_1923_5_43
Type: pfam
Location: 41256 - 41879 (-)
Gene ID: HRGMv2_1923_5_44
Type: TC
Location: 41899 - 42900 (-)
Gene ID: HRGMv2_1923_5_45
Type: pfam
Location: 42949 - 43278 (-)
Gene ID: HRGMv2_1923_5_46
Type: pfam
Location: 43327 - 43461 (-)
Gene ID: HRGMv2_1923_5_47
Type: TC
Location: 43607 - 44845 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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