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Cluster: HRGMv2_1917_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1917_2 HRGMv2_1917_2_35 47427 48560 + 3.A.1.103.4
TC HRGMv2_1917_2 HRGMv2_1917_2_36 48571 49344 + 3.A.1.103.1
CAZyme HRGMv2_1917_2 HRGMv2_1917_2_37 49364 51547 + GT2 | GT2
pfam HRGMv2_1917_2 HRGMv2_1917_2_38 51560 52402 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_1917_2 HRGMv2_1917_2_39 52622 54118 + Sulfatase
CAZyme HRGMv2_1917_2 HRGMv2_1917_2_40 54124 55092 + GT2
CAZyme HRGMv2_1917_2 HRGMv2_1917_2_41 55102 56064 + GT2
CAZyme HRGMv2_1917_2 HRGMv2_1917_2_42 56090 56944 + GT2
NULL(UNKNOWN) HRGMv2_1917_2 HRGMv2_1917_2_43 57084 57782 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1917_2 HRGMv2_1917_2_44 57925 59088 + GT4
Gene ID: HRGMv2_1917_2_35
Type: TC
Location: 47427 - 48560 (+)
Gene ID: HRGMv2_1917_2_36
Type: TC
Location: 48571 - 49344 (+)
Gene ID: HRGMv2_1917_2_37
Type: CAZyme
Location: 49364 - 51547 (+)
Gene ID: HRGMv2_1917_2_38
Type: pfam
Location: 51560 - 52402 (+)
Gene ID: HRGMv2_1917_2_39
Type: pfam
Location: 52622 - 54118 (+)
Gene ID: HRGMv2_1917_2_40
Type: CAZyme
Location: 54124 - 55092 (+)
Gene ID: HRGMv2_1917_2_41
Type: CAZyme
Location: 55102 - 56064 (+)
Gene ID: HRGMv2_1917_2_42
Type: CAZyme
Location: 56090 - 56944 (+)
Gene ID: HRGMv2_1917_2_43
Type:
Location: 57084 - 57782 (+)
Gene ID: HRGMv2_1917_2_44
Type: CAZyme
Location: 57925 - 59088 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1917_2_35 vegan > omnivore 2.34429 0.01188

🧭 Explore Read Mapping of CGC

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