Cluster: HRGMv2_1917_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1917
- CGC Family ID: CGCFAM_02224
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1917_33 | HRGMv2_1917_33_4 | 3637 | 4536 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1917_33 | HRGMv2_1917_33_5 | 4543 | 5298 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1917_33 | HRGMv2_1917_33_6 | 5369 | 6139 | - | 3.A.1.134.12 |
| NULL(UNKNOWN) | HRGMv2_1917_33 | HRGMv2_1917_33_7 | 6136 | 7431 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1917_33 | HRGMv2_1917_33_8 | 7606 | 8436 | - | PHP |
| TC | HRGMv2_1917_33 | HRGMv2_1917_33_9 | 8557 | 9576 | - | 3.A.1.11.7 |
Gene ID: HRGMv2_1917_33_4
Type: CAZyme
Location: 3637 - 4536 (+)
Type: CAZyme
Location: 3637 - 4536 (+)
Gene ID: HRGMv2_1917_33_5
Type:
Location: 4543 - 5298 (+)
Type:
Location: 4543 - 5298 (+)
Gene ID: HRGMv2_1917_33_6
Type: TC
Location: 5369 - 6139 (-)
Type: TC
Location: 5369 - 6139 (-)
Gene ID: HRGMv2_1917_33_7
Type:
Location: 6136 - 7431 (-)
Type:
Location: 6136 - 7431 (-)
Gene ID: HRGMv2_1917_33_8
Type: pfam
Location: 7606 - 8436 (-)
Type: pfam
Location: 7606 - 8436 (-)
Gene ID: HRGMv2_1917_33_9
Type: TC
Location: 8557 - 9576 (-)
Type: TC
Location: 8557 - 9576 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.