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Cluster: HRGMv2_1917_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1917_27 HRGMv2_1917_27_12 10007 12223 - GT2
pfam HRGMv2_1917_27 HRGMv2_1917_27_13 12232 12618 - CTP_transf_like
TC HRGMv2_1917_27 HRGMv2_1917_27_14 12629 13456 - 3.A.1.104.2
TC HRGMv2_1917_27 HRGMv2_1917_27_15 13465 14286 - 3.A.1.104.1
pfam HRGMv2_1917_27 HRGMv2_1917_27_16 14510 14896 + DUF3783
TC HRGMv2_1917_27 HRGMv2_1917_27_17 14926 15900 - 8.A.5.1.4
TC HRGMv2_1917_27 HRGMv2_1917_27_18 15925 16770 - 8.A.5.1.4
STP HRGMv2_1917_27 HRGMv2_1917_27_19 16788 17552 - Fer4
pfam HRGMv2_1917_27 HRGMv2_1917_27_20 17692 18297 - His_Phos_1
TC HRGMv2_1917_27 HRGMv2_1917_27_21 18541 20889 + 9.A.8.1.6
pfam HRGMv2_1917_27 HRGMv2_1917_27_22 20904 21950 + 2-Hacid_dh | 2-Hacid_dh_C
pfam HRGMv2_1917_27 HRGMv2_1917_27_23 22094 23704 + PRK
TC HRGMv2_1917_27 HRGMv2_1917_27_24 23755 24735 - 8.A.5.1.4
Gene ID: HRGMv2_1917_27_12
Type: CAZyme
Location: 10007 - 12223 (-)
Gene ID: HRGMv2_1917_27_13
Type: pfam
Location: 12232 - 12618 (-)
Gene ID: HRGMv2_1917_27_14
Type: TC
Location: 12629 - 13456 (-)
Gene ID: HRGMv2_1917_27_15
Type: TC
Location: 13465 - 14286 (-)
Gene ID: HRGMv2_1917_27_16
Type: pfam
Location: 14510 - 14896 (+)
Gene ID: HRGMv2_1917_27_17
Type: TC
Location: 14926 - 15900 (-)
Gene ID: HRGMv2_1917_27_18
Type: TC
Location: 15925 - 16770 (-)
Gene ID: HRGMv2_1917_27_19
Type: STP
Location: 16788 - 17552 (-)
Gene ID: HRGMv2_1917_27_20
Type: pfam
Location: 17692 - 18297 (-)
Gene ID: HRGMv2_1917_27_21
Type: TC
Location: 18541 - 20889 (+)
Gene ID: HRGMv2_1917_27_22
Type: pfam
Location: 20904 - 21950 (+)
Gene ID: HRGMv2_1917_27_23
Type: pfam
Location: 22094 - 23704 (+)
Gene ID: HRGMv2_1917_27_24
Type: TC
Location: 23755 - 24735 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1917_27_13 vegan > omnivore 1.08244 0.01188

🧭 Explore Read Mapping of CGC

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