Cluster: HRGMv2_1917_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1917
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1917_26 | HRGMv2_1917_26_20 | 16347 | 17756 | + | GH1 |
| TC | HRGMv2_1917_26 | HRGMv2_1917_26_21 | 17753 | 18595 | + | 2.A.115.1.1 |
| TF | HRGMv2_1917_26 | HRGMv2_1917_26_22 | 18703 | 19401 | - | GntR |
| CAZyme | HRGMv2_1917_26 | HRGMv2_1917_26_23 | 19547 | 21760 | + | GH16_6 |
| TC | HRGMv2_1917_26 | HRGMv2_1917_26_24 | 22083 | 23036 | + | 3.A.1.2.16 |
Gene ID: HRGMv2_1917_26_20
Type: CAZyme
Location: 16347 - 17756 (+)
Type: CAZyme
Location: 16347 - 17756 (+)
Gene ID: HRGMv2_1917_26_21
Type: TC
Location: 17753 - 18595 (+)
Type: TC
Location: 17753 - 18595 (+)
Gene ID: HRGMv2_1917_26_22
Type: TF
Location: 18703 - 19401 (-)
Type: TF
Location: 18703 - 19401 (-)
Gene ID: HRGMv2_1917_26_23
Type: CAZyme
Location: 19547 - 21760 (+)
Type: CAZyme
Location: 19547 - 21760 (+)
Gene ID: HRGMv2_1917_26_24
Type: TC
Location: 22083 - 23036 (+)
Type: TC
Location: 22083 - 23036 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.