Cluster: HRGMv2_1917_CGC35
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1917
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1917_26 | HRGMv2_1917_26_2 | 695 | 2026 | + | GH3 |
| pfam | HRGMv2_1917_26 | HRGMv2_1917_26_3 | 2162 | 2443 | + | Ribosomal_S6 |
| TC | HRGMv2_1917_26 | HRGMv2_1917_26_4 | 2456 | 2920 | + | 3.A.7.19.1 |
Gene ID: HRGMv2_1917_26_2
Type: CAZyme
Location: 695 - 2026 (+)
Type: CAZyme
Location: 695 - 2026 (+)
Gene ID: HRGMv2_1917_26_3
Type: pfam
Location: 2162 - 2443 (+)
Type: pfam
Location: 2162 - 2443 (+)
Gene ID: HRGMv2_1917_26_4
Type: TC
Location: 2456 - 2920 (+)
Type: TC
Location: 2456 - 2920 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1917_26_3 | vegan > omnivore | 1.34409 | 0.01188 |