Cluster: HRGMv2_1917_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1917
- CGC Family ID: CGCFAM_00417
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1917_24 | HRGMv2_1917_24_19 | 21682 | 23493 | + | 9.B.18.2.1 |
| STP | HRGMv2_1917_24 | HRGMv2_1917_24_20 | 23540 | 24757 | + | Aminotran_1_2 |
| TC | HRGMv2_1917_24 | HRGMv2_1917_24_21 | 24748 | 25440 | + | 9.B.18.1.3 |
| pfam | HRGMv2_1917_24 | HRGMv2_1917_24_22 | 25449 | 26054 | + | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | HRGMv2_1917_24 | HRGMv2_1917_24_23 | 26060 | 27208 | + | GT4 |
Gene ID: HRGMv2_1917_24_19
Type: TC
Location: 21682 - 23493 (+)
Type: TC
Location: 21682 - 23493 (+)
Gene ID: HRGMv2_1917_24_20
Type: STP
Location: 23540 - 24757 (+)
Type: STP
Location: 23540 - 24757 (+)
Gene ID: HRGMv2_1917_24_21
Type: TC
Location: 24748 - 25440 (+)
Type: TC
Location: 24748 - 25440 (+)
Gene ID: HRGMv2_1917_24_22
Type: pfam
Location: 25449 - 26054 (+)
Type: pfam
Location: 25449 - 26054 (+)
Gene ID: HRGMv2_1917_24_23
Type: CAZyme
Location: 26060 - 27208 (+)
Type: CAZyme
Location: 26060 - 27208 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.