Cluster: HRGMv2_1917_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1917
- CGC Family ID: CGCFAM_00220
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1917_23 | HRGMv2_1917_23_34 | 35266 | 36342 | - | GH177 |
| CAZyme | HRGMv2_1917_23 | HRGMv2_1917_23_35 | 36344 | 37582 | - | GT4 |
| pfam | HRGMv2_1917_23 | HRGMv2_1917_23_36 | 37813 | 38964 | - | GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | RimK | ATP-grasp_4 |
| TC | HRGMv2_1917_23 | HRGMv2_1917_23_37 | 38966 | 39562 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1917_23_34
Type: CAZyme
Location: 35266 - 36342 (-)
Type: CAZyme
Location: 35266 - 36342 (-)
Gene ID: HRGMv2_1917_23_35
Type: CAZyme
Location: 36344 - 37582 (-)
Type: CAZyme
Location: 36344 - 37582 (-)
Gene ID: HRGMv2_1917_23_36
Type: pfam
Location: 37813 - 38964 (-)
Type: pfam
Location: 37813 - 38964 (-)
Gene ID: HRGMv2_1917_23_37
Type: TC
Location: 38966 - 39562 (-)
Type: TC
Location: 38966 - 39562 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.