Cluster: HRGMv2_1917_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1917
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1917_17 | HRGMv2_1917_17_46 | 46394 | 47728 | - | GH4 |
| TF | HRGMv2_1917_17 | HRGMv2_1917_17_47 | 47856 | 49196 | + | GntR |
| CAZyme | HRGMv2_1917_17 | HRGMv2_1917_17_48 | 49497 | 50102 | + | GT51 |
| pfam | HRGMv2_1917_17 | HRGMv2_1917_17_49 | 50185 | 50595 | + | DUF3842 |
| TC | HRGMv2_1917_17 | HRGMv2_1917_17_50 | 50701 | 52056 | + | 2.A.66.1.32 |
Gene ID: HRGMv2_1917_17_46
Type: CAZyme
Location: 46394 - 47728 (-)
Type: CAZyme
Location: 46394 - 47728 (-)
Gene ID: HRGMv2_1917_17_47
Type: TF
Location: 47856 - 49196 (+)
Type: TF
Location: 47856 - 49196 (+)
Gene ID: HRGMv2_1917_17_48
Type: CAZyme
Location: 49497 - 50102 (+)
Type: CAZyme
Location: 49497 - 50102 (+)
Gene ID: HRGMv2_1917_17_49
Type: pfam
Location: 50185 - 50595 (+)
Type: pfam
Location: 50185 - 50595 (+)
Gene ID: HRGMv2_1917_17_50
Type: TC
Location: 50701 - 52056 (+)
Type: TC
Location: 50701 - 52056 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.