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Cluster: HRGMv2_1917_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1917_17 HRGMv2_1917_17_4 2145 7073 + CBM32 | GH173
TF HRGMv2_1917_17 HRGMv2_1917_17_5 7141 7998 - HTH_6
TC HRGMv2_1917_17 HRGMv2_1917_17_6 8377 9720 + 2.A.66.1.33
pfam HRGMv2_1917_17 HRGMv2_1917_17_7 9914 10888 + Big_2
pfam HRGMv2_1917_17 HRGMv2_1917_17_8 10940 11908 - AdoHcyase_NAD | 2-Hacid_dh_C | NAD_binding_2
TC HRGMv2_1917_17 HRGMv2_1917_17_9 12376 14256 + 9.B.18.2.1
pfam HRGMv2_1917_17 HRGMv2_1917_17_10 14253 14855 + Hexapep | PglD_N
TC HRGMv2_1917_17 HRGMv2_1917_17_11 14855 15475 + 9.B.18.1.3
pfam HRGMv2_1917_17 HRGMv2_1917_17_12 15472 16260 + 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
CAZyme HRGMv2_1917_17 HRGMv2_1917_17_13 16250 17449 + GT4
TC HRGMv2_1917_17 HRGMv2_1917_17_14 17451 18494 + 9.B.18.2.1
CAZyme HRGMv2_1917_17 HRGMv2_1917_17_15 18494 19660 + GT4
CAZyme HRGMv2_1917_17 HRGMv2_1917_17_16 19786 20688 + GT2
pfam HRGMv2_1917_17 HRGMv2_1917_17_17 20711 22126 + Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_1917_17 HRGMv2_1917_17_18 22119 23339 + GT4
NULL(UNKNOWN) HRGMv2_1917_17 HRGMv2_1917_17_19 23326 24735 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1917_17 HRGMv2_1917_17_20 24814 26022 + GT4
Gene ID: HRGMv2_1917_17_4
Type: CAZyme
Location: 2145 - 7073 (+)
Gene ID: HRGMv2_1917_17_5
Type: TF
Location: 7141 - 7998 (-)
Gene ID: HRGMv2_1917_17_6
Type: TC
Location: 8377 - 9720 (+)
Gene ID: HRGMv2_1917_17_7
Type: pfam
Location: 9914 - 10888 (+)
Gene ID: HRGMv2_1917_17_8
Type: pfam
Location: 10940 - 11908 (-)
Gene ID: HRGMv2_1917_17_9
Type: TC
Location: 12376 - 14256 (+)
Gene ID: HRGMv2_1917_17_10
Type: pfam
Location: 14253 - 14855 (+)
Gene ID: HRGMv2_1917_17_11
Type: TC
Location: 14855 - 15475 (+)
Gene ID: HRGMv2_1917_17_12
Type: pfam
Location: 15472 - 16260 (+)
Gene ID: HRGMv2_1917_17_13
Type: CAZyme
Location: 16250 - 17449 (+)
Gene ID: HRGMv2_1917_17_14
Type: TC
Location: 17451 - 18494 (+)
Gene ID: HRGMv2_1917_17_15
Type: CAZyme
Location: 18494 - 19660 (+)
Gene ID: HRGMv2_1917_17_16
Type: CAZyme
Location: 19786 - 20688 (+)
Gene ID: HRGMv2_1917_17_17
Type: pfam
Location: 20711 - 22126 (+)
Gene ID: HRGMv2_1917_17_18
Type: CAZyme
Location: 22119 - 23339 (+)
Gene ID: HRGMv2_1917_17_19
Type:
Location: 23326 - 24735 (+)
Gene ID: HRGMv2_1917_17_20
Type: CAZyme
Location: 24814 - 26022 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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