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Cluster: HRGMv2_1917_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1917_13 HRGMv2_1917_13_52 53506 55407 + 4.A.1.2.12
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_53 55418 56818 + GH32
pfam HRGMv2_1917_13 HRGMv2_1917_13_54 57229 58788 + PDDEXK_9 | AAA-ATPase_like
pfam HRGMv2_1917_13 HRGMv2_1917_13_55 58922 60481 + PDDEXK_9 | AAA-ATPase_like
TC HRGMv2_1917_13 HRGMv2_1917_13_56 60552 61658 - 3.D.2.3.1
TC HRGMv2_1917_13 HRGMv2_1917_13_57 61851 63653 + 3.A.1.106.12
TC HRGMv2_1917_13 HRGMv2_1917_13_58 63646 65328 + 3.A.1.106.11
Gene ID: HRGMv2_1917_13_52
Type: TC
Location: 53506 - 55407 (+)
Gene ID: HRGMv2_1917_13_53
Type: CAZyme
Location: 55418 - 56818 (+)
Gene ID: HRGMv2_1917_13_54
Type: pfam
Location: 57229 - 58788 (+)
Gene ID: HRGMv2_1917_13_55
Type: pfam
Location: 58922 - 60481 (+)
Gene ID: HRGMv2_1917_13_56
Type: TC
Location: 60552 - 61658 (-)
Gene ID: HRGMv2_1917_13_57
Type: TC
Location: 61851 - 63653 (+)
Gene ID: HRGMv2_1917_13_58
Type: TC
Location: 63646 - 65328 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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