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Cluster: HRGMv2_1917_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_8 6888 8030 + GT4
pfam HRGMv2_1917_13 HRGMv2_1917_13_9 8027 9154 + EpsG
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_10 9151 9960 + GT2
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_11 9957 11090 + GT4
pfam HRGMv2_1917_13 HRGMv2_1917_13_12 11093 12181 + Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_4
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_13 12445 13419 + GT2
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_14 13435 14580 + GT4
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_15 15053 16051 + GT2
pfam HRGMv2_1917_13 HRGMv2_1917_13_16 16044 17210 + PS_pyruv_trans
STP HRGMv2_1917_13 HRGMv2_1917_13_17 17207 18379 + Fer4 | Fer4
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_18 18384 19394 + GT2
CAZyme HRGMv2_1917_13 HRGMv2_1917_13_19 19408 20328 + GT101
TC HRGMv2_1917_13 HRGMv2_1917_13_20 20335 21885 + 2.A.66.1.40
Gene ID: HRGMv2_1917_13_8
Type: CAZyme
Location: 6888 - 8030 (+)
Gene ID: HRGMv2_1917_13_9
Type: pfam
Location: 8027 - 9154 (+)
Gene ID: HRGMv2_1917_13_10
Type: CAZyme
Location: 9151 - 9960 (+)
Gene ID: HRGMv2_1917_13_11
Type: CAZyme
Location: 9957 - 11090 (+)
Gene ID: HRGMv2_1917_13_12
Type: pfam
Location: 11093 - 12181 (+)
Gene ID: HRGMv2_1917_13_13
Type: CAZyme
Location: 12445 - 13419 (+)
Gene ID: HRGMv2_1917_13_14
Type: CAZyme
Location: 13435 - 14580 (+)
Gene ID: HRGMv2_1917_13_15
Type: CAZyme
Location: 15053 - 16051 (+)
Gene ID: HRGMv2_1917_13_16
Type: pfam
Location: 16044 - 17210 (+)
Gene ID: HRGMv2_1917_13_17
Type: STP
Location: 17207 - 18379 (+)
Gene ID: HRGMv2_1917_13_18
Type: CAZyme
Location: 18384 - 19394 (+)
Gene ID: HRGMv2_1917_13_19
Type: CAZyme
Location: 19408 - 20328 (+)
Gene ID: HRGMv2_1917_13_20
Type: TC
Location: 20335 - 21885 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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