Cluster: HRGMv2_1917_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1917
- CGC Family ID: CGCFAM_00127
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1917_1 | HRGMv2_1917_1_211 | 216645 | 218828 | - | 9.A.8.1.6 |
| STP | HRGMv2_1917_1 | HRGMv2_1917_1_212 | 218844 | 219062 | - | FeoA |
| STP | HRGMv2_1917_1 | HRGMv2_1917_1_213 | 219101 | 219334 | - | FeoA |
| CAZyme | HRGMv2_1917_1 | HRGMv2_1917_1_214 | 219454 | 220866 | - | GH1 |
| CAZyme | HRGMv2_1917_1 | HRGMv2_1917_1_215 | 221034 | 222434 | - | GH1 |
Gene ID: HRGMv2_1917_1_211
Type: TC
Location: 216645 - 218828 (-)
Type: TC
Location: 216645 - 218828 (-)
Gene ID: HRGMv2_1917_1_212
Type: STP
Location: 218844 - 219062 (-)
Type: STP
Location: 218844 - 219062 (-)
Gene ID: HRGMv2_1917_1_213
Type: STP
Location: 219101 - 219334 (-)
Type: STP
Location: 219101 - 219334 (-)
Gene ID: HRGMv2_1917_1_214
Type: CAZyme
Location: 219454 - 220866 (-)
Type: CAZyme
Location: 219454 - 220866 (-)
Gene ID: HRGMv2_1917_1_215
Type: CAZyme
Location: 221034 - 222434 (-)
Type: CAZyme
Location: 221034 - 222434 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1917_1_212 | vegan > omnivore | 3.18963 | 0.01188 |
| HRGMv2_1917_1_215 | vegan > omnivore | 3.20386 | 0.01188 |