Cluster: HRGMv2_1917_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1917
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1917_11 | HRGMv2_1917_11_52 | 51774 | 52784 | - | GH25 |
| peptidase | HRGMv2_1917_11 | HRGMv2_1917_11_53 | 52969 | 54183 | + | C40.UPW |
| CAZyme | HRGMv2_1917_11 | HRGMv2_1917_11_54 | 54333 | 55673 | + | GH1 |
| peptidase | HRGMv2_1917_11 | HRGMv2_1917_11_55 | 55854 | 57152 | + | C40.UPW |
| pfam | HRGMv2_1917_11 | HRGMv2_1917_11_56 | 57229 | 57588 | + | LrgA |
| TC | HRGMv2_1917_11 | HRGMv2_1917_11_57 | 57581 | 58276 | + | 2.A.122.1.4 |
| CAZyme | HRGMv2_1917_11 | HRGMv2_1917_11_58 | 58310 | 63172 | - | CBM32 | CBM32 | CBM32 | GH20 |
Gene ID: HRGMv2_1917_11_52
Type: CAZyme
Location: 51774 - 52784 (-)
Type: CAZyme
Location: 51774 - 52784 (-)
Gene ID: HRGMv2_1917_11_53
Type: peptidase
Location: 52969 - 54183 (+)
Type: peptidase
Location: 52969 - 54183 (+)
Gene ID: HRGMv2_1917_11_54
Type: CAZyme
Location: 54333 - 55673 (+)
Type: CAZyme
Location: 54333 - 55673 (+)
Gene ID: HRGMv2_1917_11_55
Type: peptidase
Location: 55854 - 57152 (+)
Type: peptidase
Location: 55854 - 57152 (+)
Gene ID: HRGMv2_1917_11_56
Type: pfam
Location: 57229 - 57588 (+)
Type: pfam
Location: 57229 - 57588 (+)
Gene ID: HRGMv2_1917_11_57
Type: TC
Location: 57581 - 58276 (+)
Type: TC
Location: 57581 - 58276 (+)
Gene ID: HRGMv2_1917_11_58
Type: CAZyme
Location: 58310 - 63172 (-)
Type: CAZyme
Location: 58310 - 63172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.