Cluster: HRGMv2_1917_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1917
- CGC Family ID: CGCFAM_03025
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1917_10 | HRGMv2_1917_10_42 | 32512 | 34359 | + | 4.A.1.2.11 |
| CAZyme | HRGMv2_1917_10 | HRGMv2_1917_10_43 | 34380 | 35780 | + | GH1 |
| pfam | HRGMv2_1917_10 | HRGMv2_1917_10_44 | 35872 | 37068 | + | MFS_1 | MFS_1 |
| pfam | HRGMv2_1917_10 | HRGMv2_1917_10_45 | 37200 | 37775 | + | His_Phos_1 |
| TC | HRGMv2_1917_10 | HRGMv2_1917_10_46 | 37789 | 38772 | + | 8.A.5.1.6 |
| CAZyme | HRGMv2_1917_10 | HRGMv2_1917_10_47 | 38786 | 40249 | + | GH1 |
Gene ID: HRGMv2_1917_10_42
Type: TC
Location: 32512 - 34359 (+)
Type: TC
Location: 32512 - 34359 (+)
Gene ID: HRGMv2_1917_10_43
Type: CAZyme
Location: 34380 - 35780 (+)
Type: CAZyme
Location: 34380 - 35780 (+)
Gene ID: HRGMv2_1917_10_44
Type: pfam
Location: 35872 - 37068 (+)
Type: pfam
Location: 35872 - 37068 (+)
Gene ID: HRGMv2_1917_10_45
Type: pfam
Location: 37200 - 37775 (+)
Type: pfam
Location: 37200 - 37775 (+)
Gene ID: HRGMv2_1917_10_46
Type: TC
Location: 37789 - 38772 (+)
Type: TC
Location: 37789 - 38772 (+)
Gene ID: HRGMv2_1917_10_47
Type: CAZyme
Location: 38786 - 40249 (+)
Type: CAZyme
Location: 38786 - 40249 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.