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Cluster: HRGMv2_1915_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1915_6 HRGMv2_1915_6_29 28990 29841 - 3.A.1.24.2
TC HRGMv2_1915_6 HRGMv2_1915_6_30 29870 30529 - 3.A.1.24.2
TC HRGMv2_1915_6 HRGMv2_1915_6_31 30529 31548 - 3.A.1.24.2
peptidase HRGMv2_1915_6 HRGMv2_1915_6_32 31880 32785 - G05.UPW
CAZyme HRGMv2_1915_6 HRGMv2_1915_6_33 32791 34344 - GH13_44
pfam HRGMv2_1915_6 HRGMv2_1915_6_34 34348 35115 - Hydrolase | Hydrolase_like | HAD_2
TC HRGMv2_1915_6 HRGMv2_1915_6_35 35200 36078 - 3.A.1.1.27
TC HRGMv2_1915_6 HRGMv2_1915_6_36 36078 37436 - 3.A.1.1.27
STP HRGMv2_1915_6 HRGMv2_1915_6_37 37520 38755 - SBP_bac_1
TC HRGMv2_1915_6 HRGMv2_1915_6_38 38876 40054 - 3.A.1.1.26
Gene ID: HRGMv2_1915_6_29
Type: TC
Location: 28990 - 29841 (-)
Gene ID: HRGMv2_1915_6_30
Type: TC
Location: 29870 - 30529 (-)
Gene ID: HRGMv2_1915_6_31
Type: TC
Location: 30529 - 31548 (-)
Gene ID: HRGMv2_1915_6_32
Type: peptidase
Location: 31880 - 32785 (-)
Gene ID: HRGMv2_1915_6_33
Type: CAZyme
Location: 32791 - 34344 (-)
Gene ID: HRGMv2_1915_6_34
Type: pfam
Location: 34348 - 35115 (-)
Gene ID: HRGMv2_1915_6_35
Type: TC
Location: 35200 - 36078 (-)
Gene ID: HRGMv2_1915_6_36
Type: TC
Location: 36078 - 37436 (-)
Gene ID: HRGMv2_1915_6_37
Type: STP
Location: 37520 - 38755 (-)
Gene ID: HRGMv2_1915_6_38
Type: TC
Location: 38876 - 40054 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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