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Cluster: HRGMv2_1900_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1900_5 HRGMv2_1900_5_62 61236 61979 - 9.B.158.1.3
CAZyme HRGMv2_1900_5 HRGMv2_1900_5_63 62342 66595 - GH55_1
TF HRGMv2_1900_5 HRGMv2_1900_5_64 66802 67545 - HTH_6
TC HRGMv2_1900_5 HRGMv2_1900_5_65 67709 68713 + 8.A.5.1.6
TC HRGMv2_1900_5 HRGMv2_1900_5_66 68805 70646 - 4.A.2.1.4
pfam HRGMv2_1900_5 HRGMv2_1900_5_67 70708 71505 - PHP
TC HRGMv2_1900_5 HRGMv2_1900_5_68 71617 73056 - 2.A.38.1.1
TC HRGMv2_1900_5 HRGMv2_1900_5_69 73059 74420 - 2.A.38.1.1
Gene ID: HRGMv2_1900_5_62
Type: TC
Location: 61236 - 61979 (-)
Gene ID: HRGMv2_1900_5_63
Type: CAZyme
Location: 62342 - 66595 (-)
Gene ID: HRGMv2_1900_5_64
Type: TF
Location: 66802 - 67545 (-)
Gene ID: HRGMv2_1900_5_65
Type: TC
Location: 67709 - 68713 (+)
Gene ID: HRGMv2_1900_5_66
Type: TC
Location: 68805 - 70646 (-)
Gene ID: HRGMv2_1900_5_67
Type: pfam
Location: 70708 - 71505 (-)
Gene ID: HRGMv2_1900_5_68
Type: TC
Location: 71617 - 73056 (-)
Gene ID: HRGMv2_1900_5_69
Type: TC
Location: 73059 - 74420 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1900_5_66 vegan > omnivore 2.34890 0.00186
HRGMv2_1900_5_66 vegetarian > omnivore 2.64014 0.02014
HRGMv2_1900_5_67 vegan > omnivore 5.21438 0.00186

🧭 Explore Read Mapping of CGC

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