Cluster: HRGMv2_1900_CGC38
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1900
- CGC Family ID: CGCFAM_00652
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1900_52 | HRGMv2_1900_52_3 | 1490 | 2902 | + | GH1 |
| pfam | HRGMv2_1900_52 | HRGMv2_1900_52_4 | 2995 | 3666 | + | RelA_SpoT |
| TC | HRGMv2_1900_52 | HRGMv2_1900_52_5 | 3694 | 5031 | - | 2.A.66.1.33 |
| TC | HRGMv2_1900_52 | HRGMv2_1900_52_6 | 5115 | 7676 | - | 3.A.3.2.21 |
Gene ID: HRGMv2_1900_52_3
Type: CAZyme
Location: 1490 - 2902 (+)
Type: CAZyme
Location: 1490 - 2902 (+)
Gene ID: HRGMv2_1900_52_4
Type: pfam
Location: 2995 - 3666 (+)
Type: pfam
Location: 2995 - 3666 (+)
Gene ID: HRGMv2_1900_52_5
Type: TC
Location: 3694 - 5031 (-)
Type: TC
Location: 3694 - 5031 (-)
Gene ID: HRGMv2_1900_52_6
Type: TC
Location: 5115 - 7676 (-)
Type: TC
Location: 5115 - 7676 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Species
Faecalibacillus sp900544435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1900_52_3 | vegan > omnivore | 1.75927 | 0.00186 |
| HRGMv2_1900_52_4 | vegan > omnivore | 1.95526 | 0.00186 |