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Cluster: HRGMv2_1900_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1900_30 HRGMv2_1900_30_16 16782 18356 - CBM91 | GH43_11
pfam HRGMv2_1900_30 HRGMv2_1900_30_17 18340 19179 - Hydrolase | S6PP | S6PP | Hydrolase_3
CAZyme HRGMv2_1900_30 HRGMv2_1900_30_18 19185 20321 - GH88
CAZyme HRGMv2_1900_30 HRGMv2_1900_30_19 20330 22078 - GH154
NULL(UNKNOWN) HRGMv2_1900_30 HRGMv2_1900_30_20 22053 22658 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1900_30 HRGMv2_1900_30_21 22746 23600 - 4.A.6.1.19
pfam HRGMv2_1900_30 HRGMv2_1900_30_22 23593 24453 - EII-Sor
TC HRGMv2_1900_30 HRGMv2_1900_30_23 24455 24949 - 4.A.6.1.16
Gene ID: HRGMv2_1900_30_16
Type: CAZyme
Location: 16782 - 18356 (-)
Gene ID: HRGMv2_1900_30_17
Type: pfam
Location: 18340 - 19179 (-)
Gene ID: HRGMv2_1900_30_18
Type: CAZyme
Location: 19185 - 20321 (-)
Gene ID: HRGMv2_1900_30_19
Type: CAZyme
Location: 20330 - 22078 (-)
Gene ID: HRGMv2_1900_30_20
Type:
Location: 22053 - 22658 (-)
Gene ID: HRGMv2_1900_30_21
Type: TC
Location: 22746 - 23600 (-)
Gene ID: HRGMv2_1900_30_22
Type: pfam
Location: 23593 - 24453 (-)
Gene ID: HRGMv2_1900_30_23
Type: TC
Location: 24455 - 24949 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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