Cluster: HRGMv2_1900_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1900
- CGC Family ID: CGCFAM_04899
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1900_27 | HRGMv2_1900_27_39 | 34990 | 36669 | - | 9.B.146.1.1 |
| CAZyme | HRGMv2_1900_27 | HRGMv2_1900_27_40 | 36794 | 37942 | + | GH170 |
| NULL(UNKNOWN) | HRGMv2_1900_27 | HRGMv2_1900_27_41 | 37984 | 38616 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1900_27 | HRGMv2_1900_27_42 | 38652 | 39428 | - | Hydrolase | Hydrolase_3 |
| TC | HRGMv2_1900_27 | HRGMv2_1900_27_43 | 39514 | 40503 | - | 9.B.157.1.1 |
| TC | HRGMv2_1900_27 | HRGMv2_1900_27_44 | 40609 | 41235 | - | 1.A.34.1.1 |
Gene ID: HRGMv2_1900_27_39
Type: TC
Location: 34990 - 36669 (-)
Type: TC
Location: 34990 - 36669 (-)
Gene ID: HRGMv2_1900_27_40
Type: CAZyme
Location: 36794 - 37942 (+)
Type: CAZyme
Location: 36794 - 37942 (+)
Gene ID: HRGMv2_1900_27_41
Type:
Location: 37984 - 38616 (-)
Type:
Location: 37984 - 38616 (-)
Gene ID: HRGMv2_1900_27_42
Type: pfam
Location: 38652 - 39428 (-)
Type: pfam
Location: 38652 - 39428 (-)
Gene ID: HRGMv2_1900_27_43
Type: TC
Location: 39514 - 40503 (-)
Type: TC
Location: 39514 - 40503 (-)
Gene ID: HRGMv2_1900_27_44
Type: TC
Location: 40609 - 41235 (-)
Type: TC
Location: 40609 - 41235 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Species
Faecalibacillus sp900544435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1900_27_40 | vegan > omnivore | 2.32010 | 0.00186 |
| HRGMv2_1900_27_40 | vegetarian > omnivore | 1.74473 | 0.02088 |
| HRGMv2_1900_27_44 | vegan > omnivore | 1.64397 | 0.00186 |