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Cluster: HRGMv2_1900_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1900_23 HRGMv2_1900_23_1 24 674 - 2.A.115.2.9
TF HRGMv2_1900_23 HRGMv2_1900_23_2 772 1545 + HTH_1
TC HRGMv2_1900_23 HRGMv2_1900_23_3 1551 2918 - 2.A.25.1.4
pfam HRGMv2_1900_23 HRGMv2_1900_23_4 3648 5726 - Gln-synt_C | GSIII_N | Gln-synt_C-ter
NULL(UNKNOWN) HRGMv2_1900_23 HRGMv2_1900_23_5 5873 6409 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1900_23 HRGMv2_1900_23_6 6557 7861 - 4.A.3.2.9
TF HRGMv2_1900_23 HRGMv2_1900_23_7 8101 8814 - GntR
CAZyme HRGMv2_1900_23 HRGMv2_1900_23_8 8915 10243 - GH4
Gene ID: HRGMv2_1900_23_1
Type: TC
Location: 24 - 674 (-)
Gene ID: HRGMv2_1900_23_2
Type: TF
Location: 772 - 1545 (+)
Gene ID: HRGMv2_1900_23_3
Type: TC
Location: 1551 - 2918 (-)
Gene ID: HRGMv2_1900_23_4
Type: pfam
Location: 3648 - 5726 (-)
Gene ID: HRGMv2_1900_23_5
Type:
Location: 5873 - 6409 (-)
Gene ID: HRGMv2_1900_23_6
Type: TC
Location: 6557 - 7861 (-)
Gene ID: HRGMv2_1900_23_7
Type: TF
Location: 8101 - 8814 (-)
Gene ID: HRGMv2_1900_23_8
Type: CAZyme
Location: 8915 - 10243 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1900_23_1 vegan > omnivore 18.02708 0.00186

🧭 Explore Read Mapping of CGC

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