Cluster: HRGMv2_1900_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1900
- CGC Family ID: CGCFAM_04902
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1900_22 | HRGMv2_1900_22_24 | 19993 | 22653 | - | GT51 |
| CAZyme | HRGMv2_1900_22 | HRGMv2_1900_22_25 | 22749 | 25004 | - | GT51 |
| pfam | HRGMv2_1900_22 | HRGMv2_1900_22_26 | 25001 | 25588 | - | RecU |
| pfam | HRGMv2_1900_22 | HRGMv2_1900_22_27 | 25728 | 26060 | + | DivIVA |
| TC | HRGMv2_1900_22 | HRGMv2_1900_22_28 | 26446 | 27849 | + | 2.A.38.4.1 |
| TC | HRGMv2_1900_22 | HRGMv2_1900_22_29 | 27855 | 28514 | + | 2.A.38.4.4 |
| STP | HRGMv2_1900_22 | HRGMv2_1900_22_30 | 28524 | 29063 | + | TetR_N |
| TC | HRGMv2_1900_22 | HRGMv2_1900_22_31 | 29177 | 30517 | + | 2.A.23.1.5 |
| CAZyme | HRGMv2_1900_22 | HRGMv2_1900_22_32 | 30602 | 33328 | - | CE1 | CE1 |
| TF | HRGMv2_1900_22 | HRGMv2_1900_22_33 | 33435 | 34223 | - | HTH_6 |
| TC | HRGMv2_1900_22 | HRGMv2_1900_22_34 | 34633 | 36270 | + | 2.A.53.3.9 |
| TC | HRGMv2_1900_22 | HRGMv2_1900_22_35 | 36403 | 37737 | + | 2.A.66.1.26 |
Gene ID: HRGMv2_1900_22_24
Type: CAZyme
Location: 19993 - 22653 (-)
Type: CAZyme
Location: 19993 - 22653 (-)
Gene ID: HRGMv2_1900_22_25
Type: CAZyme
Location: 22749 - 25004 (-)
Type: CAZyme
Location: 22749 - 25004 (-)
Gene ID: HRGMv2_1900_22_26
Type: pfam
Location: 25001 - 25588 (-)
Type: pfam
Location: 25001 - 25588 (-)
Gene ID: HRGMv2_1900_22_27
Type: pfam
Location: 25728 - 26060 (+)
Type: pfam
Location: 25728 - 26060 (+)
Gene ID: HRGMv2_1900_22_28
Type: TC
Location: 26446 - 27849 (+)
Type: TC
Location: 26446 - 27849 (+)
Gene ID: HRGMv2_1900_22_29
Type: TC
Location: 27855 - 28514 (+)
Type: TC
Location: 27855 - 28514 (+)
Gene ID: HRGMv2_1900_22_30
Type: STP
Location: 28524 - 29063 (+)
Type: STP
Location: 28524 - 29063 (+)
Gene ID: HRGMv2_1900_22_31
Type: TC
Location: 29177 - 30517 (+)
Type: TC
Location: 29177 - 30517 (+)
Gene ID: HRGMv2_1900_22_32
Type: CAZyme
Location: 30602 - 33328 (-)
Type: CAZyme
Location: 30602 - 33328 (-)
Gene ID: HRGMv2_1900_22_33
Type: TF
Location: 33435 - 34223 (-)
Type: TF
Location: 33435 - 34223 (-)
Gene ID: HRGMv2_1900_22_34
Type: TC
Location: 34633 - 36270 (+)
Type: TC
Location: 34633 - 36270 (+)
Gene ID: HRGMv2_1900_22_35
Type: TC
Location: 36403 - 37737 (+)
Type: TC
Location: 36403 - 37737 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Species
Faecalibacillus sp900544435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1900_22_24 | vegan > omnivore | 1.62347 | 0.00186 |
| HRGMv2_1900_22_25 | vegan > omnivore | 1.07616 | 0.00186 |
| HRGMv2_1900_22_28 | vegan > omnivore | 1.95604 | 0.00186 |
| HRGMv2_1900_22_29 | vegan > omnivore | 1.60857 | 0.00186 |
| HRGMv2_1900_22_30 | vegan > omnivore | 1.56429 | 0.00186 |