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Cluster: HRGMv2_1900_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1900_19 HRGMv2_1900_19_37 33787 35187 + GH4
pfam HRGMv2_1900_19 HRGMv2_1900_19_38 35239 35946 + ThiF
pfam HRGMv2_1900_19 HRGMv2_1900_19_39 35963 38485 + GTP_EFTU | EFG_C | MMR_HSR1 | EFG_IV | NYN_YacP
CAZyme HRGMv2_1900_19 HRGMv2_1900_19_40 38500 39660 - CE4
STP HRGMv2_1900_19 HRGMv2_1900_19_41 39693 40133 - GAF
STP HRGMv2_1900_19 HRGMv2_1900_19_42 40189 40956 + HD
TC HRGMv2_1900_19 HRGMv2_1900_19_43 40979 43324 - 3.A.3.23.2
Gene ID: HRGMv2_1900_19_37
Type: CAZyme
Location: 33787 - 35187 (+)
Gene ID: HRGMv2_1900_19_38
Type: pfam
Location: 35239 - 35946 (+)
Gene ID: HRGMv2_1900_19_39
Type: pfam
Location: 35963 - 38485 (+)
Gene ID: HRGMv2_1900_19_40
Type: CAZyme
Location: 38500 - 39660 (-)
Gene ID: HRGMv2_1900_19_41
Type: STP
Location: 39693 - 40133 (-)
Gene ID: HRGMv2_1900_19_42
Type: STP
Location: 40189 - 40956 (+)
Gene ID: HRGMv2_1900_19_43
Type: TC
Location: 40979 - 43324 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1900_19_39 vegan > omnivore 1.08826 0.00186
HRGMv2_1900_19_42 vegan > omnivore 3.51922 0.00186

🧭 Explore Read Mapping of CGC

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