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Cluster: HRGMv2_1900_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_41 33273 34430 - GT4
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_42 34434 35270 - GT2
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_43 35282 36364 - GT4
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_44 36373 37335 - GT2
pfam HRGMv2_1900_14 HRGMv2_1900_14_45 37451 38341 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_46 38419 39360 - GT2
pfam HRGMv2_1900_14 HRGMv2_1900_14_47 39362 39760 - GtrA_DPMS_TM
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_48 39841 42027 - GT2 | GT2
TC HRGMv2_1900_14 HRGMv2_1900_14_49 42040 42813 - 3.A.1.103.4
TC HRGMv2_1900_14 HRGMv2_1900_14_50 42826 43959 - 3.A.1.103.4
pfam HRGMv2_1900_14 HRGMv2_1900_14_51 44168 46129 - DUF6077
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_52 46211 47140 - GT2
pfam HRGMv2_1900_14 HRGMv2_1900_14_53 47161 47505 - DUF2304
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_54 47511 48191 - GT2
TC HRGMv2_1900_14 HRGMv2_1900_14_55 48387 49799 - 2.A.66.2.16
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_56 49812 50810 - GT2
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_57 50822 51799 - GT2
peptidase HRGMv2_1900_14 HRGMv2_1900_14_58 51884 54031 - C82.UPA
CAZyme HRGMv2_1900_14 HRGMv2_1900_14_59 54115 56754 - GH73
pfam HRGMv2_1900_14 HRGMv2_1900_14_60 56877 58490 - IspD | NTP_transf_3
pfam HRGMv2_1900_14 HRGMv2_1900_14_61 58490 59314 - LicD
TC HRGMv2_1900_14 HRGMv2_1900_14_62 59451 60815 - 9.B.18.1.2
Gene ID: HRGMv2_1900_14_41
Type: CAZyme
Location: 33273 - 34430 (-)
Gene ID: HRGMv2_1900_14_42
Type: CAZyme
Location: 34434 - 35270 (-)
Gene ID: HRGMv2_1900_14_43
Type: CAZyme
Location: 35282 - 36364 (-)
Gene ID: HRGMv2_1900_14_44
Type: CAZyme
Location: 36373 - 37335 (-)
Gene ID: HRGMv2_1900_14_45
Type: pfam
Location: 37451 - 38341 (-)
Gene ID: HRGMv2_1900_14_46
Type: CAZyme
Location: 38419 - 39360 (-)
Gene ID: HRGMv2_1900_14_47
Type: pfam
Location: 39362 - 39760 (-)
Gene ID: HRGMv2_1900_14_48
Type: CAZyme
Location: 39841 - 42027 (-)
Gene ID: HRGMv2_1900_14_49
Type: TC
Location: 42040 - 42813 (-)
Gene ID: HRGMv2_1900_14_50
Type: TC
Location: 42826 - 43959 (-)
Gene ID: HRGMv2_1900_14_51
Type: pfam
Location: 44168 - 46129 (-)
Gene ID: HRGMv2_1900_14_52
Type: CAZyme
Location: 46211 - 47140 (-)
Gene ID: HRGMv2_1900_14_53
Type: pfam
Location: 47161 - 47505 (-)
Gene ID: HRGMv2_1900_14_54
Type: CAZyme
Location: 47511 - 48191 (-)
Gene ID: HRGMv2_1900_14_55
Type: TC
Location: 48387 - 49799 (-)
Gene ID: HRGMv2_1900_14_56
Type: CAZyme
Location: 49812 - 50810 (-)
Gene ID: HRGMv2_1900_14_57
Type: CAZyme
Location: 50822 - 51799 (-)
Gene ID: HRGMv2_1900_14_58
Type: peptidase
Location: 51884 - 54031 (-)
Gene ID: HRGMv2_1900_14_59
Type: CAZyme
Location: 54115 - 56754 (-)
Gene ID: HRGMv2_1900_14_60
Type: pfam
Location: 56877 - 58490 (-)
Gene ID: HRGMv2_1900_14_61
Type: pfam
Location: 58490 - 59314 (-)
Gene ID: HRGMv2_1900_14_62
Type: TC
Location: 59451 - 60815 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1900_14_41 vegan > omnivore 3.39265 0.00186
HRGMv2_1900_14_41 vegetarian > omnivore 2.45066 0.03923
HRGMv2_1900_14_43 vegan > omnivore 2.11757 0.00186
HRGMv2_1900_14_45 vegan > omnivore 1.13607 0.00186
HRGMv2_1900_14_45 vegetarian > omnivore 2.71483 0.01723
HRGMv2_1900_14_48 vegan > omnivore 2.07939 0.00186
HRGMv2_1900_14_48 vegetarian > omnivore 1.59631 0.02298
HRGMv2_1900_14_49 vegan > omnivore 1.49970 0.00186
HRGMv2_1900_14_58 vegan > omnivore 15.19451 0.00186

🧭 Explore Read Mapping of CGC

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