Cluster: HRGMv2_1900_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1900
- CGC Family ID: CGCFAM_03394
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1900_14 | HRGMv2_1900_14_12 | 7636 | 8940 | - | 4.A.3.2.9 |
| pfam | HRGMv2_1900_14 | HRGMv2_1900_14_13 | 9298 | 10086 | - | Big_2 | Zn_Ribbon_1 | YARHG |
| pfam | HRGMv2_1900_14 | HRGMv2_1900_14_14 | 10277 | 10756 | + | QueT |
| TC | HRGMv2_1900_14 | HRGMv2_1900_14_15 | 10796 | 11023 | - | 3.D.1.6.3 |
| pfam | HRGMv2_1900_14 | HRGMv2_1900_14_16 | 11145 | 11639 | + | Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10 |
| CAZyme | HRGMv2_1900_14 | HRGMv2_1900_14_17 | 11649 | 12656 | - | GH25 |
Gene ID: HRGMv2_1900_14_12
Type: TC
Location: 7636 - 8940 (-)
Type: TC
Location: 7636 - 8940 (-)
Gene ID: HRGMv2_1900_14_13
Type: pfam
Location: 9298 - 10086 (-)
Type: pfam
Location: 9298 - 10086 (-)
Gene ID: HRGMv2_1900_14_14
Type: pfam
Location: 10277 - 10756 (+)
Type: pfam
Location: 10277 - 10756 (+)
Gene ID: HRGMv2_1900_14_15
Type: TC
Location: 10796 - 11023 (-)
Type: TC
Location: 10796 - 11023 (-)
Gene ID: HRGMv2_1900_14_16
Type: pfam
Location: 11145 - 11639 (+)
Type: pfam
Location: 11145 - 11639 (+)
Gene ID: HRGMv2_1900_14_17
Type: CAZyme
Location: 11649 - 12656 (-)
Type: CAZyme
Location: 11649 - 12656 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Species
Faecalibacillus sp900544435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1900_14_14 | vegan > omnivore | 1.30528 | 0.00186 |
| HRGMv2_1900_14_15 | vegan > omnivore | 3.09935 | 0.00186 |