Cluster: HRGMv2_1900_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1900
- CGC Family ID: CGCFAM_05693
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1900_13 | HRGMv2_1900_13_57 | 49562 | 50542 | - | 8.A.5.1.4 |
| pfam | HRGMv2_1900_13 | HRGMv2_1900_13_58 | 50547 | 51386 | - | adh_short | KR | adh_short_C2 | SDR |
| TF | HRGMv2_1900_13 | HRGMv2_1900_13_59 | 51499 | 52356 | + | HTH_1 |
| CAZyme | HRGMv2_1900_13 | HRGMv2_1900_13_60 | 52391 | 53875 | - | GH1 |
| TC | HRGMv2_1900_13 | HRGMv2_1900_13_61 | 53962 | 54804 | - | 8.A.5.1.4 |
Gene ID: HRGMv2_1900_13_57
Type: TC
Location: 49562 - 50542 (-)
Type: TC
Location: 49562 - 50542 (-)
Gene ID: HRGMv2_1900_13_58
Type: pfam
Location: 50547 - 51386 (-)
Type: pfam
Location: 50547 - 51386 (-)
Gene ID: HRGMv2_1900_13_59
Type: TF
Location: 51499 - 52356 (+)
Type: TF
Location: 51499 - 52356 (+)
Gene ID: HRGMv2_1900_13_60
Type: CAZyme
Location: 52391 - 53875 (-)
Type: CAZyme
Location: 52391 - 53875 (-)
Gene ID: HRGMv2_1900_13_61
Type: TC
Location: 53962 - 54804 (-)
Type: TC
Location: 53962 - 54804 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Species
Faecalibacillus sp900544435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1900_13_58 | vegan > omnivore | 2.00006 | 0.00186 |
| HRGMv2_1900_13_59 | vegan > omnivore | 1.21799 | 0.00186 |